Table 2.
Central hypervariable region (CVR) locus-based intra-genotype resolution.
| Strain | Location | Year | Genotype | Tetrameric Repeats | TRS |
|---|---|---|---|---|---|
| drc35/10/1 | Ngaliema * | 2010 | I | AAAAAAAAAAAAAAAAAAAAAAAAAAAAABNAB NBTDBNAAAAAAAAAAAF |
51 |
| drcKG28110805 | Ngaliema * | 2010 | I | AAAAAAAAABNABNBTABNAAAAAAAAAAAAAAAAA AAAAAAAAF |
45 |
| drc65/11/4 | Nsele * | 2011 | I | AAAAAABNABNBTDBNAAAAAAAAF | 25 |
| drc74/09/2 | Nsele * | 2009 | I | AAAAAAAAAAAAAAAAAAAAAAF | 23a |
| drc74/09/3 | Nsele * | 2009 | I | AAAAAAAAAAAAAAAAAAAAAAF | 23a |
| drc74/09/4 | Nsele * | 2009 | I | AAAAAAAAAAAAAAAAAAAAAAF | 23a |
| drc74/09/6 | Nsele * | 2009 | I | AAAAAAAAAAAAAAAAAAAAAAF | 23a |
| drc94/09/2 | Kintambo * | 2009 | I | AAAAAAAAAAAAAAAAAAAAAAF | 23a |
| drc27/11/3 | Ngafula * | 2011 | I | AAAAAAAAAAAAAAAAAAAAAAF | 23a |
| drc27/11/5 | Ngafula * | 2011 | I | AAAAAAAAAAAAAAAAAAAAAAF | 23a |
| drcKG28040802 | Kasavubu * | 2008 | I | AAAAAAAAAAAAAAAF | 16 |
| drc96/12/1 | Mayanda | 2012 | I | AAAAAAAAAAAAAAAF | 16 |
| drc96/12/2 | Mayanda | 2012 | I | AAAAAAAAAAAAAAAF | 16 |
| drc96/12/3 | Mayanda | 2012 | I | AAAAAAAAAAAAAAAF | 16 |
| drc99/05a | Ngafula * | 2005 | I | AAAAAAAAAAAAAF | 14 |
| drc51/10/23 | Ndjili * | 2010 | I | AAAAAAAAAAAF | 12 |
| drc85/10/13 | Ngafula * | 2010 | I | AAAAAAAAAAAF | 12 |
| drc85/10/27 | Ngafula * | 2010 | I | AAAAAAAAAAAF | 12 |
| drc86/10/3 | Ngafula * | 2010 | I | AAAAAAAAAAAF | 12 |
| drc86/10/1 | Ngafula * | 2010 | I | AAAAAAAAAAAF | 12 |
| drc108/10/1 | Ngafula * | 2010 | I | AAAAAAAAAAAF | 12 |
| drc108/10/3 | Ngafula * | 2010 | I | AAAAAAAAAAAF | 12 |
| drc108/10/5 | Ngafula * | 2010 | I | AAAAAAAAAAAF | 12 |
| drc85/10/12 | Ngafula * | 2010 | I | AAAAAAAAAAF | 11 |
| drc73/10/2 | Ngaliema * | 2010 | I | AAAAAAAAAAF | 11 |
| drc73/10/3 | Ngaliema * | 2010 | I | AAAAAAAAAAF | 11 |
| drc73/10/4 | Ngaliema * | 2010 | I | AAAAAAAAAAF | 11 |
| drc49/05/P2a | Limete * | 2005 | I | AAAAAAAAAF | 10 |
| drc85/10/25 | Ngafula * | 2010 | I | AAAAAAAAF | 9 |
| drc75/05/1 | Maniema | 2005 | I | AAAAAAAAF | 9 |
| drc49/05/p1b | Limete * | 2005 | I | AAAAAAAAF | 9 |
| drc65/11/3 | Nsele * | 2011 | I | AAAAAAAF | 8 |
| drc49/05/p1a | Limete * | 2005 | I | AAAAAF | 6 |
| drc70/05/1 | Limete * | 2005 | I | AAAAF | 5 |
| Con09/Ni16 | Congo 1 | 2009 | I | AAAAAAAAAF | 10 |
| Kat67 | DRC(Zaire) 2 | 1967 | I | AAAAAAAABNABTDBNAAAAAAA | 23 |
| Nig13_KAF_14 | Nigeria 3 | 2014 | I | ABNABNAAAAACBNAFA | 17 |
| drc66/07/491 | Yakoma | 2007 | IX | AAABBAABBNABBAABBNABNABA | 24a |
| drc66/07/43 | Yakoma | 2007 | IX | AAABNABBBNABBAABBNABNABA | 24b |
| drc66/07/50 | Yakoma | 2007 | IX | AAABNABBBNABBAABBNABNABA | 24b |
| drc66/07/492 | Yakoma | 2007 | IX | AAABNABBBNABBAABBNABNABA | 24b |
| drc66/07/48 | Yakoma | 2007 | IX | AAAABNABBNABBAABBNABNABA | 24c |
| drc35/08/p42 | Boende | 2008 | IX | AAAABNABBNABBAABBNABNABA | 24c |
| drc35/08/18 | Boende | 2008 | IX | AAAABNABBNABBAABBNABNABA | 24c |
| drc35/08/13 | Boende | 2008 | IX | AAAABNABBNABBAABBNABNABA | 24c |
| drc35/08/3 | Boende | 2008 | IX | AAAABNABBNABBAABBNABNABA | 24c |
| drc35/08/20 | Boende | 2008 | IX | AAAABNABBNABBAABBNABNABA | 24c |
| drc35/08/1 | Boende | 2008 | IX | AAAABNABBNABBAABBNABNABA | 24c |
| drc35/08/15 | Boende | 2008 | IX | AAAABNABBNABBAABBNABNABA | 24c |
| drc35/08/3a | Boende | 2008 | IX | AAAABNABBNABBAABBNABNABA | 24c |
| drc25/08/3 | Boende | 2008 | IX | AAAABNABBNABBAABBNABNABA | 24c |
| drc25/08/9 | Boende | 2008 | IX | AAAABNABBNABBAABBNABNABA | 24c |
| drc25/08/42 | Boende | 2008 | IX | AAAABNABBNABBAABBNABNABA | 24c |
| drcKG31208/3 | Lingwala * | 2008 | IX | AAAABNABBNABBAAABNABNABA | 24d |
| drc20/07/19 | Mahagi | 2007 | IX | AAABNABBNABBAABBNABNABA | 23b |
| drc20/07/20 | Mahagi | 2007 | IX | AAABNABBNABBAABBNABNABA | 23b |
| drc86/10/2 | Ngafula * | 2010 | IX | AAAAAAAAAAAF | 12 |
| UG03H.1 | Uganda 4 | 2003 | IX | AAABNABBNABBAABBNABNABA | 23b |
| Ken06.B1 | Kenya 5 | 2006 | IX | AAABNABBNABBAABBNABNABA | 23b |
| drc35/10/3 | Ngaliema * | 2010 | XIV | AAAAAAAAAAAAAAAAAAAAAAAAAAAAABNABNBTDBN AAAAAAAAAAAF |
51 |
| drc21/07/p22 | Kipushi | 2007 | XIV | AVVOVAVVNBVOV | 13 |
| ETH/3 | Ethiopia 6 | 2011 | XXIII | ABNAAAAACBNABTDBNAFA | 20 |
Codes as labeled in previous studies: [20,26,28,29,30]. TRS, tetrameric repeat sequence number; *, indicates strains collected within Kinshasa Province. A=CAST, CVST, CTST, or CASI; B=CADT, CADI, CTDT, or CAGT; C = GAST or GANT; F = CANT or CAAT; N = NVDT, NVGT, NVDI, or NCDT; T = NVNT; H = RAST; S = SAST; O = NANI, NADI, or NASI; V = NAST, NAVT, NADT, or NANT; D = CASM; G = CTNT; M = NEDT; W = SADT or SVDT; U = NIDT or NTD. Additional sequences utilized in this table from previous studies: 1 [17]; 2 [26]; 3 [16]; 4 [13]; 5 [13]; 6 [14].