Table 2. List of samples and their corresponding accession numbers included in phylogenetic and comparative analyses.
| Infraorder | Family | Species | Accession | Reference |
|---|---|---|---|---|
| Axiidea | Callianassidae | Callianassa ceramica | KU350630.1 | This study |
| Callianassa ceramica | KU362925.1 | Gan et al. (2016) | ||
| Corallianassa coutierei | NC_020025.1 | Shen, Braband & Scholtz (2013) | ||
| Nihonotrypaea japonica | NC_020351.1 | Kim et al. (2013) | ||
| Nihonotrypaea thermophila | NC_019610.1 | Lin et al. (2012) | ||
| Paraglypturus tonganus | NC_024651.1 | Kim et al. (2016b) | ||
| Trypaea australiensis1 | KM501040.2 | This study | ||
| Strahlaxiidae | Neaxius acanthus2 | NC_019609.1 | Lin et al. (2012) | |
| Gebiidea | Thalassinidae | Thalassina kelanang | NC_019608.1 | Lin et al. (2012) |
| Upogebiidae | Austinogebia edulis | NC_019606.1 | Lin et al. (2012) | |
| Upogebia major | NC_019607.1 | Lin et al. (2012) | ||
| Upogebia pusilla | NC_020023.1 | Shen, Braband & Scholtz (2013) | ||
| Upogebia yokoyai | NC_025943.1 | Yang et al. (2016) | ||
| Caridea | Alvinocarididae | Alvinocaris chelys | NC_018778.1 | Yang et al. (2012) |
| Alvinocaris longirostris | NC_020313.1 | Yang et al. (2013) | ||
| Nautilocaris saintlaurentae | NC_021971.1 | Kim, Pak & Ju (2015a) | ||
| Opaepele loihi | NC_020311.1 | Yang et al. (2013) | ||
| Rimicaris exoculata | NC_027116.1 | Yu et al. (2015) | ||
| Rimicaris kairei | NC_020310.1 | Yang et al. (2013) | ||
| Alpheidae | Alpheus distinguendus | NC_014883.1 | Qian et al. (2011) | |
| Alpheus lobidens | KP276147.1 | This study | ||
| Atyidae | Caridina gracilipes | NC_024751.1 | Xu et al. (2016) | |
| Caridina cf. nilotica | KU726823.1 | This study | ||
| Halocaridina rubra | NC_008413.1 | Ivey & Santos (2007) | ||
| Neocaridina denticulata | NC_023823.1 | Yu, Yang & Yang (2014) | ||
| Paratya australiensis | NC_027603.1 | Gan et al. (2016b) | ||
| Palaemonidae | Macrobrachium bullatum | KM978918.1 | This study | |
| Macrobrachium lanchesteri | NC_012217.1 | L. Ngernsiri & P. Sangthong, 2016, unpublished data | ||
| Macrobrachium nipponense | NC_015073.1 | Ma et al. (2011) | ||
| Macrobrachium rosenbergii | NC_006880.1 | Miller et al. (2005) | ||
| Palaemon carinicauda | NC_012566.1 | Shen et al. (2009) | ||
| Palaemon gravieri | NC_029240.1 | Kim et al. (2015b) | ||
| Palaemon serenus | NC_027601.1 | Gan et al. (2016b) | ||
| Dendrobranchiata (outgroup) | Sergestidae | Acetes chinensis | NC_017600.1 | Kim et al. (2012) |
| Penaeidae | Farfantepenaeus californiensis | NC_012738.1 | Gutiérrez-Millán et al. (2002) | |
| Fenneropenaeus chinensis | NC_009679.1 | Shen et al. (2007) | ||
| Fenneropenaeus merguiensis | NC_026884.1 | Zhang et al. (2016a) | ||
| Fenneropenaeus penicillatus | NC_026885.1 | Zhang et al. (2015) | ||
| Litopenaeus vannamei | NC_009626.1 | L. Ngernsiri & P. Sangthong, 2016, unpublished data | ||
| Marsupenaeus japonicas | NC_007010.1 | Yamauchi et al. (2004) | ||
| Metapenaeopsis dalei | NC_029457.1 | Kim et al. (2016a) | ||
| Metapenaeus ensis | NC_026834.1 | Zhang et al. (2016b) | ||
| Parapenaeopsis hardwickii | NC_030277.1 | Mao et al. (2016) | ||
| Penaeus monodon | NC_002184.1 | Wilson et al. (2000) | ||
| Solenoceridae | Solenocera crassicornis | NC_030280.1 | Y. Yuan et al., 2016, unpublished data |
Note:
1
Mitogenome from taxonomically verified T. australiensis sample resubmitted as version two under same accession number.
2
Neaxius acanthus from Taiwan was wrongly identified as Neaxius glyptocercus by Lin et al. (2012).