Table 2.
Diverse motifs of the GCRV proteins predicted to interact with grass carp JAM-A protein
| Virus protein name | Domain | Motif pattern | Motif | Motif_start | Motif_end | Motif_length | Surface accessibility |
|---|---|---|---|---|---|---|---|
| Sigma1-like | V-set | Y..S…D | YVGSSSVD | 190 | 198 | 8 | EBBEEEBE |
| Sigma1-like | V-set | D.[AGS][FL] | DLGL DGGL DLSL |
297 341 350 |
354 345 354 |
4 4 4 |
BEEE EEBE EEEE |
| VP3 | V-set | N.NG | NTNG | 1159 | 1163 | 4 | EEEB |
| VP4 | V-set | N.NG | NING | 11 | 15 | 4 | BBEE |
| VP4 | V-set | N.NG | NPNG | 41 | 45 | 4 | BEEB |
| VP4 | V-set | N.N.S.H | NPNDSAH | 532 | 539 | 7 | EEEEEEE |
E exposed residue, and B buried residue