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RIP analysis of segment III of 93AOHDC251. A sliding window analysis (window size 200 nt, step 1 nt; significance threshold 0.90) comparing 93AOHDC251 to consensus subtype sequences A1 and G, and CRF02 prototype sequence IBNG showed that this region was closer to CRF02 in both the A1 and G parts. The CRF02 A1/G breakpoint is indicated by a bashed vertical line. The top bar indicates statistical significance, and the lower bar best match.
