Table 3.
Genetic diversity estimates at nd4 and mc1r loci in Podarcis lizards
| Species | Species range (km2) | nd4 | mc1r | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| N | ns | S | h | Hd (SD) | π (SD) | K | N | ns | S | h | Hd (SD) | π (SD) | K | ||
| P. bocagei [55–57] | 58387 | 22 | 661 | 18.0 | 18.0 | 0.978 (0.021) | 0.00321 (0.00034) | 2.1 | 12 | 583 | 5.0 | 3.0 | 0.621 (0.118) | 0.00377 (0.00075) | 2.2 |
| P. carbonelli [55, 56] | 4684 | 25 | 661 | 25.0 | 20.0 | 0.980 (0.017) | 0.00607 (0.00058) | 4.0 | - | - | - | - | - | - | - |
| 22 | 661 | 23.5 | 18.1 | 0.980 | 0.00610 | 4.0 | |||||||||
| P. filfolensis [58] | 338 | 94 | 661 | 32.0 | 27.0 | 0.900 (0.020) | 0.00471 (0.00040) | 3.1 | 130 | 583 | 20.0 | 27.0 | 0.904 (0.012) | 0.00535 (0.00024) | 3.1 |
| 22 | 661 | 17.4 | 12.3 | 0.904 | 0.00473 | 3.1 | 12 | 583 | 9.8 | 7.7 | 0.899 | 0.00537 | 3.1 | ||
| P. lilfordi [59] | <100 | 92 | 583 | 23.0 | 27.0 | 0.920 (0.015) | 0.00520 (0.00037) | 3.0 | |||||||
| 12 | 583 | 11.6 | 8.5 | 0.924 | 0.00532 | 3.1 | |||||||||
| P. muralis [60] | 1830883 | 77 | 661 | 141.0 | 55.0 | 0.987 (0.005) | 0.03089 (0.00112) | 20.4 | 162 | 583 | 35.0 | 31.0 | 0.835 (0.017) | 0.00308 (0.00025) | 1.8 |
| 22 | 661 | 97.5 | 19.3 | 0.985 | 0.03096 | 20.5 | 12 | 583 | 6.7 | 6.2 | 0.832 | 0.00304 | 1.8 | ||
| P. pityusensis [59] | 741 | 44 | 583 | 10.0 | 14.0 | 0.897 (0.022) | 0.00416 (0.00031) | 2.4 | |||||||
| 12 | 583 | 7.0 | 7.4 | 0.900 | 0.00423 | 2.5 | |||||||||
| P. tiliguerta a | 32898 | 148 | 661 | 220.0 | 104.0 | 0.9936 (0.0017) | 0.09994 (0.00191) | 65.8 | 250 | 583 | 92.0 | 148.0 | 0.9897 (0.0020) | 0.00691 (0.00024) | 4.0 |
| 22 | 661 | 190.2 | 20.7 | 0.994 | 0.10072 | 66.5 | 12 | 583 | 17.6 | 11.3 | 0.989 | 0.00685 | 4.0 | ||
| P. vaucheri species complex [55, 56, 61, 62] | 305794 | 87 | 661 | 135.0 | 68.0 | 0.995 (0.003) | 0.03492 (0.00166) | 23.1 | - | - | - | - | - | - | - |
| 22 | 661 | 94.5 | 20.9 | 0.995 | 0.03558 | 23.5 | |||||||||
| P. wagleriana b | 23914 | 101 | 661 | 30.0 | 28.0 | 0.828 (0.029) | 0.00396 (0.00023) | 2.6 | 186 | 583 | 13.0 | 16.0 | 0.790 (0.020) | 0.00289 (0.00021) | 1.7 |
| 22 | 661 | 12.8 | 9.9 | 0.833 | 0.00398 | 2.6 | 12 | 583 | 5.9 | 5.3 | 0.764 | 0.00276 | 1.6 | ||
N number of sampled gene copies, ns number of sites of the alignment used for the calculations, S number of segregating sites, h number of haplotypes, Hd haplotype diversity, π nucleotide diversity, K average number of pairwise differences, SD standard deviation. For the diversity measures S, h, Hd, π and K values calculated under a resampling approach are also reported below values calculated on the original datasets (see text for details). Numbers in square brackets after species names refer to publications that generated the sequence data (asequences generated in this study; bSalvi et al., unpublished sequence data). Species range (extent of occurrence) is based on spatial data from [IUCN, 2016]