. 2017 Mar 3;12(3):e0173039. doi: 10.1371/journal.pone.0173039

Table 7. List of SNPs associated to qualitative data in tetraploid accessions of S. tuberosum of the Colombian Central Collection.

Variable	Variable abbreviation	Marker	Chromosome	Position (bp)	log₁₀(p-value)	Model¹	Significance
Stem Color	ST	solcap_snp_c2_46710	7	4874743	5.16	SD	^*
Stem Color	ST	solcap_snp_c2_36061	4	58752313	5.09	DD	^*
Primary Tuber Skin Intensity Color	PTSIC	solcap_snp_c2_21750	2	25053972	5.29	AD	^*
Primary Tuber Skin Intensity Color	PTSIC	solcap_snp_c2_51533	7	53656225	5.05	DD	^*
Distribution of Secondary Tuber Skin Color	DSTSC	solcap_snp_c2_45235	10	58437496	6.62	AD	^***
Primary Tuber Flesh Color	PTFC	solcap_snp_c2_12578	7	53077509	4.75	SD	^*
Secondary Tuber Flesh Color	STFC	solcap_snp_c2_35705	2	47327646	5.33	SD	^**
Secondary Tuber Flesh Color	STFC	solcap_snp_c1_12945	4	57899405	4.6	SD	^*
Distribution of Secondary Tuber Flesh Color	DSTFC	solcap_snp_c2_15070	2	45695772	4.64	SD	^*
General Tuber Shape	GTS	solcap_snp_c2_26014	7	50155390	4.74	DD	^*
Primary Flower Color	PFC	solcap_snp_c2_24563	12	243727	4.76	SD	^*
		solcap_snp_c1_5388	3	3161621	4.94	DD	^*
		solcap_snp_c2_23355	7	42119766	5.5	DD	^**
		solcap_snp_c2_46329	7	48224240	6.36	DD	^**
		solcap_snp_c1_9878	7	50960978	5.86	DD	^**
		solcap_snp_c2_45693	10	51357092	6.53	DD	^***
		solcap_snp_c1_16169	1	44194124	5.29	DD	^*
		solcap_snp_c2_23347	7	42120645	7.01	DD	^***
Primary Flower Intensity Color	PFIC	solcap_snp_c1_4464	5	32104744	5.53	DA	^**
		solcap_snp_c2_45701	3	43326802	5.19	DD	^*
		solcap_snp_c2_42348	6	36881223	5.88	DD	^**
Primary Flower Color / Primary Flower Intensity Color	PFC/PFIC	solcap_snp_c2_36468	3	38153740	5.87/4.85	DA/SD	^**
Primary Flower Color / Primary Flower Intensity Color	PFC/PFIC	solcap_snp_c2_43970	1	13545189	9.36/5.29	DD	^***

¹ Model with the most significant marker is listed. AD = additive, SD = simplex dominant, DD = duplex dominant, DA = diplo—additive. Significant

* < 0.05

** < 0.01

*** <0.001