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. 2017 Mar 4;18:153. doi: 10.1186/s12859-017-1563-6

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 4 — ProteoModlR enables large-scale analysis of experimentally measured protein abundance and PTM stoichiometry. Relative abundance of four representative proteins from 2784 proteins analyzed from SILAC-labeled CD8+ T cells stimulated with IL-2, as compared to unstimulated control, and analyzed using MaxQuant [19]. T-cell receptor signaling-dependent LCK and ZAP70 proteins exhibit no changes upon IL-2 stimulation, whereas IL-2 receptor dependent STAT5A and NFIL3 exhibits increases in abundance or phosphorylation stoichiometry upon IL-2 stimulation