Table 2.
Kyoto Encyclopedia of Genes and Genomes (KEGG) classification of significantly (P < 0.01, FDR < 0.01) enriched pathways, following transcriptomic analysis of differentially expressed genes.
| IDa | Term | Downb | Upc |
|---|---|---|---|
| ko00970 | Aminoacyl-tRNA biosynthesis | 1 | 0 |
| ko00906 | Carotenoid biosynthesis | 4 | 2 |
| ko04713 | Circadian entrainment | 0 | 3 |
| ko00073 | Cutin | 1 | 3 |
| ko00904 | Diterpenoid biosynthesis | 3 | 1 |
| ko01212 | Fatty acid metabolism | 0 | 3 |
| ko00941 | Flavonoid biosynthesis | 5 | 5 |
| ko00480 | Glutathione metabolism | 4 | 8 |
| ko00591 | Linoleic acid metabolism | 0 | 2 |
| ko00980 | Metabolism of xenobiotics by cytochrome P450 | 4 | 5 |
| ko00902 | Monoterpenoid biosynthesis | 0 | 2 |
| ko03015 | mRNA surveillance pathway | 3 | 4 |
| ko00360 | Phenylalanine metabolism | 3 | 9 |
| ko00940 | Phenylpropanoid biosynthesis | 8 | 10 |
| ko04744 | Phototransduction | 0 | 2 |
| ko04075 | Plant hormone signal transduction | 10 | 6 |
| ko04974 | Protein processing | 3 | 0 |
| ko00620 | Pyruvate metabolism | 8 | 4 |
| ko03010 | Ribosome | 4 | 7 |
| ko03008 | Ribosome biogenesis in eukaryotes | 3 | 11 |
| ko03018 | RNA degradation | 3 | 7 |
| ko03013 | RNA transport | 1 | 7 |
| ko00600 | Sphingolipid metabolism | 1 | 1 |
| ko03040 | Spliceosome | 0 | 4 |
| ko00500 | Starch and sucrose metabolism | 16 | 12 |
| ko00900 | Terpenoid backbone biosynthesis | 7 | 2 |
| ko00750 | Vitamin B6 metabolism | 1 | 2 |
| ko00908 | Zeatin biosynthesis | 2 | 2 |
a
Pathway-map ID in the KEGG database (http://www.genome.jp/kegg/).
b,c
Numbers of genes down- or up-regulated in the chlorotic leaves (compared with leaves from the non-chlorotic leaves).