Table 5. Unique genes of Clade 3 and isolates 103, 106 and 133.
| Locus | Producta | Sizeb | Location | Query Coverage |
|---|---|---|---|---|
| Clade 3c | ||||
| 103_01388 | Transcriptional regulator | 184 | Contig 5c | 100% |
| 103_01956 | Methylthioadenosine/S-adenosylhomocysteine nucleosidase | 181 | Contig 10c | 97% |
| 103_02913d | Hypothetical protein | 133 | Contig 19c | |
| 103_02915d | Putative flavodoxin | 222 | Contig 19c | 100% |
| 103_02916d | Putative oxidoreductase | 286 | Contig 19c | 100% |
| 103_02917d | MerR Transcriptional regulator | 135 | Contig 19c | 100% |
| 103_03125 | Hypothetical protein | 255 | Contig 22c | |
| 103_03128 | Hypothetical protein | 200 | Contig 22c | |
| 103_03130 | Hypothetical protein | 198 | Contig 22c | |
| 103_03132 | Hypothetical protein | 233 | Contig 22c | |
| 103_03133 | Hypothetical protein | 214 | Contig 22c | |
| 103_03507 | Hypothetical protein | 372 | Contig 32c | |
| 103_03634 | Hypothetical protein | 110 | Contig 34c | |
| 103_03635 | MBL fold metallo-hydrolase | 253 | Contig 34c | 100% |
| 103_03735 | Hypothetical protein | 282 | Contig 63 | |
| Isolate 103 | ||||
| 103_01535 | Cobalamin-binding protein | 220 | Contig 7 | 95% |
| 103_01536 | Uroporphyrinogen decarboxylase | 288 | Contig 7 | 75% |
| 103_01537 | Iron-sulfur protein | 574 | Contig 7 | |
| 103_01538 | Methylcobamide–CoM methyltransferase | 344 | Contig 7 | 97% |
| 103_01539 | Uroporphyrinogen-III decarboxylase | 362 | Contig 7 | 98% |
| 103_01540 | Membrane transport protein | 303 | Contig 7 | |
| 103_01541 | Metal ABC transporter substrate-binding protein | 273 | Contig 7 | 99% |
| 103_01542 | Methionine ABC transporter permease | 222 | Contig 7 | 100% |
| 103_01543 | ABC transporter ATP-binding protein | 335 | Contig 7 | 97% |
| 103_01544 | IS30 family transposase | 318 | Contig 7 | 99% |
| Isolate 106 | ||||
| 106_00822 | Multidrug-efflux transporter 1 regulator | 275 | Contig 4 | |
| 106_00823 | Cytidylate kinase | 204 | Contig 4 | 100% |
| 106_00824 | MATE family efflux transporter | 442 | Contig 4 | 100% |
| 106_00827 | RNA polymerase sigma factor FliA | 138 | Contig 4 | 100% |
| 106_01206 | Antirestriction protein ArdA | 167 | Contig 6 | 98% |
| 106_01208 | Hypothetical protein | 188 | Contig 6 | |
| 106_01209 | Nucleotidyltransferase, polymerase | 294 | Contig 6 | 98% |
| 106_01213 | Hypothetical protein | 234 | Contig 6 | |
| 106_02320 | Endonuclease | 367 | Contig 14 | 99% |
| 106_03618 | Ribonuclease/integrase | 407 | Contig 35 | |
| 106_03620 | Transposase | 252 | Contig 35 | 94% |
| 106_03734 | Membrane protein | 716 | Contig 48 | 98% |
| Isolate 133 | ||||
| 133_02100 | GIY-YIG catalytic domain-containing protein | 401 | Contig 11 | |
| 133_02107 | Hypothetical protein | 120 | Contig 11 | |
| 133_02109 | Hypothetical protein | 318 | Contig 11 | |
| 133_02112 | Hypothetical protein | 102 | Contig 11 | |
| 133_02117 | HaeIII-like C-5 cytosine methyltransferase | 340 | Contig 11 | 97% |
| 133_02118 | BspRI-like C-5 cytosine methyltransferase | 350 | Contig 11 | 96% |
| 133_03129 | Flp pilus assembly protein CpaB | 261 | Contig 24 | 91% |
| 133_03131 | ATPase involved in chromosome partitioning/Flp pilus assembly protein, ATPase CpaE | 261 | Contig 24 | 99% |
| 133_03131 | Type II secretion system protein E/Flp pilus assembly protein, ATPase CpaF | 256 | Contig 24 | |
| 133_03133 | Hypothetical protein | 287 | Contig 24 | |
| 133_03134 | Hypothetical protein | 138 | Contig 24 | |
| 133_03137 | Hypothetical protein | 176 | Contig 24 | |
| 133_03174 | Hypothetical protein | 177 | Contig 24 | |
| 133_03175 | Transcriptional regulator | 116 | Contig 24 | 95% |
| 133_03177 | radC-like JAB domain protein | 127 | Contig 24 | |
| 133_03181 | Chromosome/plasmid-partitioning protein ParA | 276 | Contig 24 | 97% |
| 133_03182 | Chromosome/plasmid-partitioning protein ParB | 450 | Contig 24 | |
| 133_03183 | Transcriptional regulator | 194 | Contig 24 | |
| 133_03185 | Adenosine monophosphate/protein transferase VbhT | 112 | Contig 24 | 100% |
aAnnotation was curated using Protein BLAST (https://blast.ncbi.nlm.nih.gov) against non-redundant protein sequences in GenBank. bSize, the number of amino acids. cLoci and locations refer to those of isolate 103. dThese genes are accessory genes of Tn6218.