Table 2.
Significant genetic regions in GWAS results of milk fat
| CHR | Region ID | regDIS | p-value | Bonferroni | SNP ID | SNP Pos | SNP p-value | Ensembl gene ID (Gene symbol) | QTL trait |
|---|---|---|---|---|---|---|---|---|---|
| 2 | CHR2:78302162 | 131569 | 1.78E-08 | 1.46.E-04 | Hapmap26185-BTA-157573 | 78302162 | 3.41.E-03 | ||
| -78433731 | Hapmap40841-BTA-94957 | 78332368 | 2.18.E-03 | ||||||
| BTB-01945480 | 78366932 | 2.06.E-03 | |||||||
| BTB-01767882 | 78405537 | 9.17.E-03 | |||||||
| BTB-01767855 | 78433731 | 4.18.E-03 | |||||||
| 2 | CHR2:78691609 | 201692 | 3.05E-06 | 2.50.E-02 | BTB-01860738 | 78691609 | 5.29.E-04 | ||
| -78893301 | BTB-01860839 | 78726622 | 2.13.E-01 | ||||||
| BTB-00103543 | 78749162 | 1.08.E-01 | |||||||
| BTB-01374180 | 78872254 | 3.80.E-03 | |||||||
| BTB-01374162 | 78893301 | 5.49.E-03 | |||||||
| 2 | CHR2:80605588 | 396947 | 1.15E-06 | 9.45.E-03 | ARS-BFGL-NGS-41490 | 80605588 | 6.49.E-02 | ENSBTAG00000014832 (TMEFF2) | |
| -81002535 | ARS-BFGL-NGS-5680 | 80666057 | 1.92.E-02 | ENSBTAG00000046400 | |||||
| Hapmap50262-BTA-122131 | 80687709 | 4.03.E-02 | ENSBTAG00000018653 (NABP1) | ||||||
| ARS-BFGL-NGS-94696 | 80970515 | 1.89.E-03 | ENSBTAG00000018497 (SDPR) | ||||||
| ARS-BFGL-NGS-102243 | 81002535 | 8.33.E-04 | |||||||
| 2 | CHR2:86831095 | 173378 | 5.21E-06 | 4.27.E-02 | BTA-90292-no-rs | 86831095 | 6.92.E-01 | ENSBTAG00000007635 (PLCL1) | Meat_and_Carcass_Association |
| -87004473 | BTA-90298-no-rs | 86868918 | 2.31.E-01 | (Intermuscular fat percentage: QTLID25126) | |||||
| Hapmap38934-BTA-117244 | 86909355 | 2.24.E-03 | Meat_and_Carcass_Association | ||||||
| Hapmap41106-BTA-90288 | 86959111 | 2.79.E-03 | (Subcutaneous fat: QTLID25127) | ||||||
| ARS-BFGL-NGS-55270 | 87004473 | 4.87.E-04 | Meat_and_Carcass_Association | ||||||
| (Intermuscular fat percentage: QTLID25128) | |||||||||
| Exterior_Association | |||||||||
| (Udder structure: QTLID25015) | |||||||||
| Milk_Association | |||||||||
| (Milk fat percentage: QTLID25003) | |||||||||
| Exterior_Association | |||||||||
| (Udder structure: QTLID25017) | |||||||||
| 3 | CHR3:69182813 | 208532 | 1.17E-06 | 9.61.E-03 | BTB-01635025 | 69182813 | 3.76.E-01 | ENSBTAG00000042950 (SNORD45) | |
| -69391345 | BTB-00133734 | 69292666 | 6.16.E-03 | ENSBTAG00000024240 (ACADM) | |||||
| BTB-00133701 | 69315385 | 1.54.E-03 | ENSBTAG00000005864 (ASB17) | ||||||
| BTB-00133671 | 69342335 | 6.32.E-03 | ENSBTAG00000043447 (SNORD45) | ||||||
| BTB-01711286 | 69391345 | 3.58.E-03 | ENSBTAG00000018447 (RABGGTB) | ||||||
| ENSBTAG00000018448 (MSH4) | |||||||||
| ENSBTAG00000042353 (SNORD45) | |||||||||
| 15 | CHR15:67269656 | 159969 | 9.74E-08 | 8.00.E-04 | ARS-BFGL-NGS-36801 | 67269656 | 5.86.E-02 | ENSBTAG00000044158 | Reproduction_QTL |
| -67429625 | ARS-BFGL-NGS-111525 | 67323237 | 1.94.E-03 | (LDLRAD3) | |||||
| Hapmap41218-BTA-28547 | 67358867 | 3.53.E-03 | (Calving ease (direct) : QTLID15193) | ||||||
| ARS-BFGL-NGS-92508 | 67386416 | 3.68.E-05 | Reproduction_QTL | ||||||
| BTB-00611649 | 67429625 | 2.88.E-01 | (Calving index: QTLID15194) | ||||||
| Reproduction_QTL | |||||||||
| (Calving ease (maternal) : QTLID15192) | |||||||||
| Production_QTL | |||||||||
| (Average Daily Gain: QTLID22798) |
GWAS, genome-wide association studies; CHR, chromosome; SNP, single nucleotide polymorphism; QTL, quantitative trait locus.