Table 1.
Summary of complete chloroplast genomes for twelve Oryza species.
| Region | O. aust | O. min | O. niv | O. rufi | O. s. ind | O. s. jap | O. offi | O. barth | O. punc | O. meri | O. long | O. glum |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| LSC | ||||||||||||
| Length (bp) | 81,074 | 80,974 | 80,544 | 80,594 | 80,512 | 80,594 | 80,952 | 80,684 | 80,621 | 80,604 | 80,595 | 80,612 |
| GC(%) | 37.07 | 37.1 | 37.12 | 37.11 | 37.09 | 37.1 | 37.1 | 37.1 | 37.05 | 37.1 | 37.1 | 37.1 |
| Length (%) | 59.95 | 59.9 | 59.8 | 59.9 | 59.8 | 59.9 | 60 | 59.9 | 59.8 | 59.9 | 59.8 | 59.8 |
| SSC | ||||||||||||
| Length (bp) | 12,470 | 12,446 | 12,346 | 12,347 | 12,345 | 12,345 | 12,330 | 12,381 | 12,387 | 12,347 | 12,357 | 12,356 |
| GC(%) | 33.18 | 33.3 | 33.33 | 33.33 | 33.3 | 33.34 | 33.33 | 33.33 | 33.34 | 33.33 | 33.33 | 33.33 |
| Length (%) | 9.22 | 9.2 | 9.1 | 9.1 | 9.1 | 9.1 | 9.1 | 9.1 | 9.1 | 9.17 | 9.1 | 9.1 |
| IR | ||||||||||||
| Length (bp) | 20,840 | 20,836 | 20,802 | 20,802 | 20,795 | 20,795 | 20,813 | 20,804 | 20,797 | 20,803 | 20,807 | 20,807 |
| GC(%) | 44.33 | 44.3 | 44.35 | 44.35 | 44.3 | 44.3 | 44.3 | 44.3 | 44.4 | 44.4 | 44.33 | 44.33 |
| Length (%) | 15.4 | 15 | 15.4 | 15.4 | 15.4 | 15.4 | 15.4 | 15.4 | 15.4 | 15.4 | 15.4 | 15.4 |
| Total | ||||||||||||
| GC(%) | 38.95 | 39 | 39.1 | 39 | 39 | 39 | 39 | 39 | 39 | 39 | 39 | 39 |
| Length (%) | 135,224 | 135,094 | 134,494 | 134,544 | 134,448 | 134,525 | 134,911 | 134,674 | 134,604 | 134,558 | 134,567 | 134,583 |
O. aust, O. australiensis; O. min, O. minuta; O. niv, O. nivara; O. rufi, O. rufipogon; O. sat. ind, O. sativa indica; O.s. jap, O. sativa japonica; O. offi, O. officinalis; O. barth, O. barthii; O. punc, O. punctate; O. meri, O. meridionalis; O. long, O. longistaminata; O. glum, O. glumipatula.