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. 2004 Dec;78(24):14066–14069. doi: 10.1128/JVI.78.24.14066-14069.2004

FIG. 3.

FIG. 3.

Phylogenetic analysis of gag, pol, env, Vpu, and Rev. Using Clustal X (version 1.81) followed by PAUP (version 4.0), unrooted bootstrapped phylogenetic trees were generated for gag (A), pol (B), env (C), Vpu (D), and Rev (E) of HIV1084i. One thousand bootstrap replicates, a gap opening penalty of 50 (or 10), a gap extension penalty of 5 (or 0.1), and the International Union of Biochemistry DNA (or Gonnet 250 protein) weight matrix were used to generate the trees. Only bootstrap values greater than 70 are indicated. All reference DNA sequences were obtained from the Los Alamos National Laboratory HIV database (http://hiv-web.lanl.gov/). 93IN101 (AB023804) is referred to herein as Indie-C1 (9).