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. 2016 Jul 12;7(45):72381–72394. doi: 10.18632/oncotarget.10546

Table 2. Top-ranked RNA editing SNP-EOC risk associations among all histologies (N = 10,891) or serous histology (N = 6,500) versus controls (N = 21,693), sorted by gene and p-value.

Gene SNP Alleles MAF Imputation accuracy R2 All histologies OR (95% CI) P FDR Serous OR (95% CI) P FDR
ADAR rs9426826 C>G 0.481 0.86 1.05 (1.02-1.09) 0.0038 0.76 1.04 (1-1.08) 0.0759 0.9996
rs3738030 A>C 0.116 0.79 0.93 (0.89-0.98) 0.0080 0.83 0.91 (0.86-0.97) 0.0038 0.9996
ADAR3 rs77027562a A>G 0.009 0.41 1.39 (1.17-1.64) 0.0001 0.34 1.33 (1.08-1.62) 0.0061 0.9996
rs11250601 C>T 0.070 0.62 0.89 (0.83-0.95) 0.0007 0.34 0.9 (0.83-0.97) 0.0071 0.9996
rs142123280b A>G 0.001 0.48 2.08 (1.36-3.17) 0.0007 0.34 2.01 (1.23-3.29) 0.0056 0.9996
rs4880912 T>C 0.200 0.82 1.07 (1.03-1.11) 0.0015 0.51 1.06 (1.01-1.11) 0.0267 0.9996
rs11598359 C>T 0.005 0.45 0.68 (0.54-0.87) 0.0018 0.53 0.63 (0.47-0.86) 0.0032 0.9996
rs6560760 C>T 0.025 0.59 1.17 (1.06-1.3) 0.0024 0.65 1.07 (0.95-1.22) 0.2688 0.9996
rs2676202c C>T 0.122 0.66 0.93 (0.88-0.98) 0.0038 0.76 0.9 (0.85-0.96) 0.0014 0.9996
rs139646191 TAGAA>T 0.062 0.66 1.11 (1.03-1.18) 0.0038 0.76 1.07 (0.98-1.16) 0.1242 0.9996
rs139812582 G>A 0.002 0.47 1.71 (1.15-2.54) 0.0078 0.83 2.03 (1.31-3.14) 0.0017 0.9996
chr10:1419524 T>TGG 0.009 0.60 0.79 (0.65-0.95) 0.0106 0.83 0.68 (0.54-0.86) 0.0014 0.9996
rs185147330 C>T 0.005 0.45 1.32 (1.05-1.67) 0.0176 0.86 1.54 (1.19-2) 0.0011 0.9996
SND1 rs185455523 T>A 0.008 0.56 0.68 (0.56-0.83) 0.0002 0.34 0.6 (0.46-0.77) 0.0001 0.45
rs145106202d G>C 0.009 0.87 0.73 (0.61-0.88) 0.0008 0.35 0.67 (0.53-0.84) 0.0006 0.9996
rs181460088 C>T 0.008 0.80 0.73 (0.6-0.89) 0.0021 0.58 0.67 (0.52-0.86) 0.0020 0.9996
rs199750392 G>GT 0.036 0.61 1.14 (1.05-1.25) 0.0028 0.71 1.11 (1-1.23) 0.0550 0.9996
rs79138382 C>T 0.007 0.72 1.32 (1.09-1.61) 0.0056 0.83 1.42 (1.13-1.77) 0.0025 0.9996

Significant SNPs (P < 4.0×10−3) are listed and SNPs in LD (r2>0.60) with more significant SNP are not reported:

a)

7 SNPs in LD not reported

b)

12 SNPs in LD not reported

c)

1 SNP in LD not reported

d)

1 SNP in LD not reported