Table 2. Top-ranked RNA editing SNP-EOC risk associations among all histologies (N = 10,891) or serous histology (N = 6,500) versus controls (N = 21,693), sorted by gene and p-value.
Gene | SNP | Alleles | MAF | Imputation accuracy R2 | All histologies OR (95% CI) | P | FDR | Serous OR (95% CI) | P | FDR |
---|---|---|---|---|---|---|---|---|---|---|
ADAR | rs9426826 | C>G | 0.481 | 0.86 | 1.05 (1.02-1.09) | 0.0038 | 0.76 | 1.04 (1-1.08) | 0.0759 | 0.9996 |
rs3738030 | A>C | 0.116 | 0.79 | 0.93 (0.89-0.98) | 0.0080 | 0.83 | 0.91 (0.86-0.97) | 0.0038 | 0.9996 | |
ADAR3 | rs77027562a | A>G | 0.009 | 0.41 | 1.39 (1.17-1.64) | 0.0001 | 0.34 | 1.33 (1.08-1.62) | 0.0061 | 0.9996 |
rs11250601 | C>T | 0.070 | 0.62 | 0.89 (0.83-0.95) | 0.0007 | 0.34 | 0.9 (0.83-0.97) | 0.0071 | 0.9996 | |
rs142123280b | A>G | 0.001 | 0.48 | 2.08 (1.36-3.17) | 0.0007 | 0.34 | 2.01 (1.23-3.29) | 0.0056 | 0.9996 | |
rs4880912 | T>C | 0.200 | 0.82 | 1.07 (1.03-1.11) | 0.0015 | 0.51 | 1.06 (1.01-1.11) | 0.0267 | 0.9996 | |
rs11598359 | C>T | 0.005 | 0.45 | 0.68 (0.54-0.87) | 0.0018 | 0.53 | 0.63 (0.47-0.86) | 0.0032 | 0.9996 | |
rs6560760 | C>T | 0.025 | 0.59 | 1.17 (1.06-1.3) | 0.0024 | 0.65 | 1.07 (0.95-1.22) | 0.2688 | 0.9996 | |
rs2676202c | C>T | 0.122 | 0.66 | 0.93 (0.88-0.98) | 0.0038 | 0.76 | 0.9 (0.85-0.96) | 0.0014 | 0.9996 | |
rs139646191 | TAGAA>T | 0.062 | 0.66 | 1.11 (1.03-1.18) | 0.0038 | 0.76 | 1.07 (0.98-1.16) | 0.1242 | 0.9996 | |
rs139812582 | G>A | 0.002 | 0.47 | 1.71 (1.15-2.54) | 0.0078 | 0.83 | 2.03 (1.31-3.14) | 0.0017 | 0.9996 | |
chr10:1419524 | T>TGG | 0.009 | 0.60 | 0.79 (0.65-0.95) | 0.0106 | 0.83 | 0.68 (0.54-0.86) | 0.0014 | 0.9996 | |
rs185147330 | C>T | 0.005 | 0.45 | 1.32 (1.05-1.67) | 0.0176 | 0.86 | 1.54 (1.19-2) | 0.0011 | 0.9996 | |
SND1 | rs185455523 | T>A | 0.008 | 0.56 | 0.68 (0.56-0.83) | 0.0002 | 0.34 | 0.6 (0.46-0.77) | 0.0001 | 0.45 |
rs145106202d | G>C | 0.009 | 0.87 | 0.73 (0.61-0.88) | 0.0008 | 0.35 | 0.67 (0.53-0.84) | 0.0006 | 0.9996 | |
rs181460088 | C>T | 0.008 | 0.80 | 0.73 (0.6-0.89) | 0.0021 | 0.58 | 0.67 (0.52-0.86) | 0.0020 | 0.9996 | |
rs199750392 | G>GT | 0.036 | 0.61 | 1.14 (1.05-1.25) | 0.0028 | 0.71 | 1.11 (1-1.23) | 0.0550 | 0.9996 | |
rs79138382 | C>T | 0.007 | 0.72 | 1.32 (1.09-1.61) | 0.0056 | 0.83 | 1.42 (1.13-1.77) | 0.0025 | 0.9996 |
Significant SNPs (P < 4.0×10−3) are listed and SNPs in LD (r2>0.60) with more significant SNP are not reported:
7 SNPs in LD not reported
12 SNPs in LD not reported
1 SNP in LD not reported
1 SNP in LD not reported