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. Author manuscript; available in PMC: 2017 Mar 7.
Published in final edited form as: J Chem Theory Comput. 2015 Sep 11;11(10):4593–4600. doi: 10.1021/acs.jctc.5b00684

Figure 1.

Figure 1

A plot of the probability density (F) of a given combination of the derivative (∂ΔGrep/∂xi) of the repulsive component (ΔGrep) of the free energy required to insert an uncharged molecule into solution with respect to the atomic coordinates (xi) and the derivative (∂A/∂xi) of the solvent-accessible surface area (A) with respect to xi for the second chain of the 1UDI complex. The red line is a least-squares line drawn through all of the points. Its slope provides an estimate of γrep for this protein, and it is equal to 0.022 kcal mol−1 Å−2. Those atoms for which both ∂ΔGrep/∂xi and ∂A/∂xi were equal to 0 were not included when computing F. If they had been included, the peak in F would have been significantly larger.