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. Author manuscript; available in PMC: 2017 May 3.
Published in final edited form as: Nature. 2016 Sep 5;539(7627):112–117. doi: 10.1038/nature19796

Extended Data Table 1. Tumorgraft features.

Fuhrman grade of primary tumor and stage at presentation (metachronous metastasis may have developed); Tissue, engrafted tissue; IHC, immunohistochemistry from tumorgrafts; GI, growth inhibition; ccRCC, clear-cell renal cell carcinoma; tRCC, translocation renal cell carcinoma; Abd, abdominal; Tu Thr, tumor thrombus; LN, lymph node; mut, mutant; wt, wild-type.

Response XP NO. Histology Fuhrman
Grade
Tissue Stage at
presentation
VHL
status
BAP1
(IHC)
PBRM1
(IHC)
Relative GI%
(p value)
RNA
seq
Sensitive XP26 ccRCC 2 Adrenal pT1aNxMx mut mut wt 87 (0.0003)
XP144 ccRCC 4 Kidney pT2aN1Mx mut wt wt 98 (<0.0001) Y
XP164 ccRCC* 4 Kidney pT4NxMx wt wt wt 134 (<0.0001) Y
XP165 ccRCC 3 Abd wall pT3bNxMx mut wt mut 112 (<0.0001)
XP373 ccRCC 4 Tu Thr pT3aN1M1 wt mut wt 103 (<0.0001) Y
XP374 ccRCC*# 4 Kidney pT4NxMx mut wt wt 109 (<0.0001) Y
XP453 ccRCC 3 Tu Thr pT3bN0Mx wt wt wt 110 (<0.0001) Y
XP454 ccRCC 3 Kidney pT3aN0Mx wt mut wt 156 (0.0032)
XP469 ccRCC 3 Kidney pT3bN0Mx mut mut mut 91 (<0.0001)
XP534 ccRCC 4 Kidney pT3aN0Mx mut mut n/a 129 (0.0007)
Intermediate XP237 tRCC n/a LN pT3aN1M1 n/a wt wt 43 (0.0144)
XP391 ccRCC 4 Tu Thr pT3bN0Mx mut wt mut 45 (0.0018)
XP426@ ccRCC# 4 Kidney pT4N1Mx mut wt wt 44 (0.0273)
XP427@ ccRCC# 4 LN pT4N1MX mut wt wt 54 (0.0206)
XP466 ccRCC 3 Kidney pT3aN0M1 wt mut n/a 67 (0.0030)
Resistant XP169 Unclassified n/a Kidney pT4N1M1 wt wt wt 0 (0.0119$) Y
XP258 ccRCC* 4 Kidney pT3aN0M1 mut mut wt 39 (0.11)
XP296 ccRCC* 4 Kidney pT3aNxM1 mut wt wt 29 (0.30) Y
XP462 Unclassified n/a Kidney pT3aN0M1 wt wt mut 29 (0.11)
XP490 ccRCC*# 4 Kidney pT3aN1M1 mut wt wt 39 (0.89) Y
XP506 ccRCC 3 Ascites pT3aN1Mx wt wt wt 20 (0.76) Y
XP530 Unclassified n/a Kidney pT3bN0Mx wt n/a n/a 2 (0.68)
@

Independent tumors from same patient,

*

Sarcomatoid differentiation,

#

Rhabdoid features,

$

PT2399-treated mice had greater relative growth than vehicle-treated mice,

promoter methylation,

promoter not methylated