Extended Data Table 1. Tumorgraft features.
Response | XP NO. | Histology | Fuhrman Grade |
Tissue | Stage at presentation |
VHL status |
BAP1 (IHC) |
PBRM1 (IHC) |
Relative GI% (p value) |
RNA seq |
---|---|---|---|---|---|---|---|---|---|---|
Sensitive | XP26 | ccRCC | 2 | Adrenal | pT1aNxMx | mut | mut | wt | 87 (0.0003) | |
XP144 | ccRCC | 4 | Kidney | pT2aN1Mx | mut | wt | wt | 98 (<0.0001) | Y | |
XP164 | ccRCC* | 4 | Kidney | pT4NxMx | wt‡ | wt | wt | 134 (<0.0001) | Y | |
XP165 | ccRCC | 3 | Abd wall | pT3bNxMx | mut | wt | mut | 112 (<0.0001) | ||
XP373 | ccRCC | 4 | Tu Thr | pT3aN1M1 | wt† | mut | wt | 103 (<0.0001) | Y | |
XP374 | ccRCC*# | 4 | Kidney | pT4NxMx | mut | wt | wt | 109 (<0.0001) | Y | |
XP453 | ccRCC | 3 | Tu Thr | pT3bN0Mx | wt† | wt | wt | 110 (<0.0001) | Y | |
XP454 | ccRCC | 3 | Kidney | pT3aN0Mx | wt‡ | mut | wt | 156 (0.0032) | ||
XP469 | ccRCC | 3 | Kidney | pT3bN0Mx | mut | mut | mut | 91 (<0.0001) | ||
XP534 | ccRCC | 4 | Kidney | pT3aN0Mx | mut | mut | n/a | 129 (0.0007) | ||
Intermediate | XP237 | tRCC | n/a | LN | pT3aN1M1 | n/a | wt | wt | 43 (0.0144) | |
XP391 | ccRCC | 4 | Tu Thr | pT3bN0Mx | mut | wt | mut | 45 (0.0018) | ||
XP426@ | ccRCC# | 4 | Kidney | pT4N1Mx | mut | wt | wt | 44 (0.0273) | ||
XP427@ | ccRCC# | 4 | LN | pT4N1MX | mut | wt | wt | 54 (0.0206) | ||
XP466 | ccRCC | 3 | Kidney | pT3aN0M1 | wt | mut | n/a | 67 (0.0030) | ||
Resistant | XP169 | Unclassified | n/a | Kidney | pT4N1M1 | wt | wt | wt | 0 (0.0119$) | Y |
XP258 | ccRCC* | 4 | Kidney | pT3aN0M1 | mut | mut | wt | 39 (0.11) | ||
XP296 | ccRCC* | 4 | Kidney | pT3aNxM1 | mut | wt | wt | 29 (0.30) | Y | |
XP462 | Unclassified | n/a | Kidney | pT3aN0M1 | wt | wt | mut | 29 (0.11) | ||
XP490 | ccRCC*# | 4 | Kidney | pT3aN1M1 | mut | wt | wt | 39 (0.89) | Y | |
XP506 | ccRCC | 3 | Ascites | pT3aN1Mx | wt‡ | wt | wt | 20 (0.76) | Y | |
XP530 | Unclassified | n/a | Kidney | pT3bN0Mx | wt | n/a | n/a | 2 (0.68) |
Independent tumors from same patient,
Sarcomatoid differentiation,
Rhabdoid features,
PT2399-treated mice had greater relative growth than vehicle-treated mice,
promoter methylation,
promoter not methylated