Table 1. Names, alias, CT Identifiers (http://www.cta.lncc.br), GeneBankIDs and primers are listed for the 29 CTAs selected for this study.
| Gene (alias) | GenBankID | CT identifier | Forward Primer | Reverse Primer |
|---|---|---|---|---|
| MAGE-A1 | NM_004988 | CT1.1 | CACCTCCTCCTCCTCTCCTC | TCTCCAGCATTTCTCGCCTTT |
| MAGE-A3 | BC016803 | CT1.3 | GCAAAGCTTCCAGTTCCTTG | AAATGTTGGGTGAGCAGCTT |
| MAGE-A4 | BC017723 | CT1.4 | GCAAGTATCGAGCCAAGGAG | TCCCAGATTTCCTCCTCAGA |
| MAGE-A8 | BE387798 | CT1.8 | AGAAGTGGACCCCTTTGTCC | GGATCACTATTGGGCACCTG |
| MAGE-B1 | BE897525 | CT3.1 | TGCTGCAGCTGTGTCATGTA | TGGCCACTAGGGTTGTCTTC |
| MAGE-B2 | BC026071 | CT3.2 | CTTCAAGCTCTCCTGCTGCT | GGAAGTGCTCCCTGAACCTT |
| GAGE-2 | BC069397 | CT4.2 | GCCTAGACCAAGACGCTACG | CCTTCTTCAGGCGTTTTCAC |
| GAGE-4 | BC069470 | CT4.4 | GCCTAGACCAAGGCGCTAT | CCTTCTTCAGGCGTTTTCAC |
| GAGE-7 | NM_021123 | CT4.7 | GGAATTCATGAGTTGGCGAGGAAGATCGACC | CCGCTCGAGTTAACACTGTGATTGCTTTTCACC |
| SSX-1 | BC001003 | CT5.1 | CTAAAGCATCAGAGAAGAGAAGC | AGATCTCTTATTAATCTTCTCAGAAA |
| SSX-2 | BC007343 | CT5.2 | GGTGCTCAAATACCAGAGAAG | GGTGCTCAAATACCAGAGAAG |
| SSX-5 | BC016640.2 | CT5 family* | GTTCTCAAATACCAGAGAAGATG | CTCTGCTGGCTTCTCGGGCG |
| NY-ESO-1 | AJ003149 | CT6.1 | GCTTCAGGGCTGAATGGAT | AAAAACACGGGCAGAAAGC |
| LAGE-1 | BC002833 | CT6.2.b | TTCTGCGCAGGATGGAAG | AAAAACACGGGCAGAAAGC |
| MAGE-E1 (MAGED4) | BC081566 | CT7.1 | AGAGCATCACAGCCCTCATT | TCAGGTGGATCCCAAACTTC |
| SPANXC | BC054023 | CT11.3 | AATGGACAAACAATCCAGTGC | CATGAATTCCTCCTCCTCCA |
| XAGE-1 | BC009538 | CT12.1.a | GTATCCGAGTCCCAGAAGCA | GATTTATCCCCGGTGTTTGA |
| ADAM2 | BC064547 | CT15 | TGCACCCCAGAACCATAAGT | CTCTCCTGCTTCCAGCTTTG |
| PAGE-5 | BC009230 | CT16.1 | CCCAATCCTCAGAAAGAGGAA | TTCACCTGCTTCCAGCACTT |
| PAGE-1 | BC010897 | CT16.3 | TCCAGAGGAAGAGGAGATGG | CTTAGCACGCTCCGGATTAG |
| LIP-1 | BC023635 | CT17 | CAGACCGTTAAGCTCCTTGC | GGTGGCATATTCTCCACCTC |
| TSP-50 | BC037775 | CT20 | TGAAACCCTGCAAGGAAAAC | GCACTGAGGGAGTCCACAAT |
| SPA17 | BC023457 | CT22 | ACGCGAGATTCTGAGAGAGC | CAGCTTGGATTTTGACAGCA |
| TPX-1 (CRISP2) | BC022011 | CT36 | AGAGGACCGCAAAACCAGTA | TTCCTTGTTGGTACGGGGTA |
| NY-SAR-35 | BC034320 | CT37 | AAAGCGAAGGGGAGGAATAG | GGGCAGGATATGTCCATTTG |
| NXF-2 | BC015020 | CT39 | TGAAACCCTGCAAGGAAAAC | GCACTGAGGGAGTCCACAAT |
| FATE-1 | BC022064 | CT43 | GAAATGTCCCTGGCAGAAGA | AATGGAAACGTATGCCTTGG |
| MAD-CT1 | NM_002762 | CT94.2 | AGGTGTACAGGCAGCAGTTG | TCTGCATGTTCTCTTCCTGGT |
| MAD-CT2 | AK097414 | * | ACCCTGAGACAACCACTTCG | ACCTGTCTGCCTTCTTGTGC |
*
CTAs not assigned a CT Identifier number, yet.