Figure 4. Rotational correlation function (RCF) of the NH bond vector of TLR4/MD2.
The RCF was calculated for the last 100 ns from each trajectory using the second order Legendre polynomial (P2) of the NH bond vector (a) and a nonlinear curve fitted with the two parameters in a model-free approach (b). Fitting was performed according to the following formula: y = a0 + (1 − a0)*exp(−x/a1).