Table 2. Candidate miRNAs selected in discovery phase and their results in validation phase.
Discovery phase | Validation phase | Pooled analysis | |||||||
---|---|---|---|---|---|---|---|---|---|
Mean Cq | FC* | P value | Mean Cq | FC* | FC† | P value | FC‡ | P value | |
miR-103a-3p | 28.0 | 0.43 | 0.0011 | 25.9 | 0.86 | 1.03 | 0.69 | 0.70 | 0.013 |
miR-107 | 29.5 | 0.68 | 0.0095 | 31.1 | 0.99 | 1.37 | 0.45 | 0.94 | 0.65 |
miR-1260a | 32.8 | 1.57 | 0.021 | 31.2 | 0.73 | 1.47 | 0.11 | 1.21 | 0.20 |
miR-141-3p | 36.3 | 2.73 | 0.044 | 35.3 | 1.05 | 1.52 | 0.58 | 1.70 | 0.071 |
miR-146b-5p | 34.8 | 0.61 | 0.036 | 32.6 | 1.54 | 1.80 | 0.025 | 1.13 | 0.42 |
miR-194-5p | 34.2 | 1.86 | 0.014 | 30.4 | 1.39 | 2.77 | 0.0025 | 1.92 | 0.00018 |
miR-19a-3p | 27.7 | 0.68 | 0.020 | 25.1 | 0.82 | 0.86 | 0.47 | 0.77 | 0.013 |
miR-200a-3p | 37.4 | 12.47 | 7.5E-06 | 36.4 | 1.22 | 2.37 | 0.10 | 3.69 | 7.1E-05 |
miR-200c-3p | 35.4 | 2.48 | 0.05 | 34.5 | 1.57 | 0.79 | 0.18 | 1.52 | 0.108 |
miR-205-5p | 36.4 | 7.04 | 0.0036 | 36.3 | 2.81 | 4.23 | 0.0071 | 4.55 | 8.5E-05 |
miR-21-5p | 25.6 | 1.55 | 0.018 | 23.7 | 1.45 | 2.59 | 5.9E-07 | 1.78 | 5.2E-07 |
miR-221-3p | 28.5 | 0.67 | 0.049 | 27.1 | 0.87 | 0.67 | 0.19 | 0.72 | 0.014 |
miR-301a-3p | 32.8 | 0.68 | 0.043 | 30.5 | 1.01 | 1.33 | 0.53 | 0.94 | 0.69 |
miR-30b-5p | 30.3 | 0.67 | 0.023 | 28.1 | 0.81 | 0.92 | 0.53 | 0.78 | 0.026 |
miR-320a | 29.2 | 1.44 | 0.05 | 26.1 | 0.76 | 0.84 | 0.35 | 1.01 | 0.96 |
miR-375 | 34.1 | 2.21 | 0.05 | 33.9 | 3.15 | 3.40 | 0.0038 | 2.81 | 0.00014 |
miR-376c-3p | 33.9 | 0.41 | 0.027 | 31.5 | 0.38 | 0.36 | 0.024 | 0.38 | 0.00051 |
miR-382-5p | 34.7 | 0.27 | 0.0020 | 33.2 | 0.37 | 0.33 | 0.026 | 0.32 | 7.6E-05 |
miR-411-5p | 38.0 | 0.49 | 0.15 | 35.6 | 0.36 | 0.46 | 0.038 | 0.44 | 0.006 |
miR-424-5p | 34.7 | 1.89 | 0.027 | 29.4 | 0.57 | 0.59 | 0.015 | 0.88 | 0.11 |
Note: quantitation cycle (Cq); fold change (FC) = 2ΔCq ; significant, consistent validated results are in bold
FC: fold change comparing samples at recurrence for patients who had recurrent diseases vs. samples at diagnosis for patients without recurrence
FC: fold change comparing samples at diagnosis for patients who had recurrence vs. samples at diagnosis for patients without recurrence
FC: fold change comparing samples from patients with recurrence vs. patients without recurrence