. 2016 Aug 27;7(46):74931–74946. doi: 10.18632/oncotarget.11647

Table 2. Oligonucleotides used in this study.

Gene	Forward primer	Reverse primer	Tan	Cycles
APAF1	ACAATGCTCTACTACATGAA GGATATAAAGA	CACTGGAAGAAGAGACAACAGGAA	60°C	40
ARID1A	TCTTGCCCATCTGATCCATT	CCAACAAAGGAGCCACCAC	60°C	40
ATF3	AAGAACGAGAAGCAGCATTTGAT	TTCTGAGCCCGGACAATACAC	60°C	40
CDKN1A	CCTCATCCCGTGTTCTCCTTT	GTACCACCCAGCGGACAAGT	60°C	40
DHRS2	CTCCATGTAGGGCAGCAACT	GTAGGGAGCACTCTGGGGAC	60°C	40
DUSP1	GTACATCAAGTCCATCTGAC	GGTTCTTCTAGGAGTAGACA	60°C	40
FAS / APO-1	AGCTTGGTCTAGAGTGAAAA	GAGGCAGAATCATGAGATAT	60°C	40
FOS	GAGAGCTGGTAGTTAGTAGCATGTTGA	AATTCCAATAATGAACCCAATA GATTAGTTA	60°C	40
GADD45B	GTCGGCCAAGTTGATGAAT	CACGATGTTGATGTCGTTGT	60°C	40
GADD45B genotyp.	CCCGTCACTGATCCCTCTTT	CTACTGCGAAGAAAGCCGG	55°C	35
GAPDH	TGCCAAATATGATGACATCAAGAA	GGAGTGGGTGTCGCTGTTG	60°C	40
HDAC1	TAAATTCTTGCGCTCCATCC	AACAGGCCATCGAATACTGG	60°C	40
HDAC2	CGTGTAATGACGGTATCATTCC	ACCAGATAATGAGTCTGCACC	60°C	40
HDAC3	CTGTGTAACGCGAGCAGAAC	GCAAGGCTTCACCAAGAGTC	60°C	40
ID2	TCAGCCTGCATCACCAGAGA	CTGCAAGGACAGGATGCTGATA	60°C	40
P53	TTGCAATAGGTGTGCGTCAGA	AGTGCAGGCCAACTTGTTCAG	60°C	40
RHOB	GGGACAGAAGTGCTTCACCT	CGACGTCATTCTCATGTGCT	60°C	40
SMARCA4	CAGCATGCCAAGGATTTCAAG	CGATCCGCTCGTTCTCTTTC	60°C	40
SMARCB1	AACGTCAGCGGGTTCAAAT	GCCTTCACCTGGAACATGAA	60°C	40
ZMYND11	TTGTTAAACGTGCCATGACC	GCATGTGTGGAGACAGAGGA	60°C	40

Gene		shRNA sequence
ARID1A sh1		5'-TCGCCTCTATGTGTCTGTGAAGGAGATTG-3'
ARID1A sh2		5'-GCAAACTCAGCATCCAGGACAACAATGTG-3'
ARID1A sh3		5'-CCTTGCTGTCTCAGCAGCCAATCAACTTA-3'
ARID1A sh4		5'-CCATTTGTGGTGGACTGCTCAGATAACGT-3'