Table 2. Top differentially expressed miRNAs, as detected by RNA sequencing.
MiRNA | EdgeR | DeSeq | ||||
---|---|---|---|---|---|---|
log2ratioa | P value | FDR | log2ratio | P value | FDR | |
hsa-miR-451a | −1.41 | 7.19E-07 | 0.0004 | −1.45 | 5.72E-05 | 0.0327 |
hsa-miR-107 | −1.32 | 2.74E-06 | 0.0008 | −1.36 | 1.26E-04 | 0.0361 |
hsa-miR-4732-5p | −1.69 | 5.27E-06 | 0.0010 | −1.73 | 6.47E-04 | 0.0683 |
hsa-miR-3688-3p | −2.56 | 1.43E-05 | 0.0016 | −2.64 | 8.73E-04 | 0.0683 |
hsa-miR-485-3p | 1.63 | 1.43E-05 | 0.0016 | 1.60 | 4.11E-04 | 0.0681 |
hsa-miR-4306 | −1.47 | 5.37E-05 | 0.0051 | −1.51 | 8.98E-04 | 0.0683 |
hsa-miR-486-5p | −1.16 | 7.81E-05 | 0.0062 | −1.20 | 4.77E-04 | 0.0681 |
hsa-miR-3143 | −1.56 | 8.90E-05 | 0.0062 | −1.62 | 1.88E-03 | 0.0975 |
hsa-miR-4433b-5p | 1.57 | 9.72E-05 | 0.0062 | 1.55 | 9.56E-04 | 0.0683 |
hsa-miR-96-5p | −1.16 | 3.33E-04 | 0.0150 | −1.20 | 1.34E-03 | 0.0784 |
hsa-miR-370-3p | 1.29 | 3.42E-04 | 0.0150 | 1.25 | 1.37E-03 | 0.0784 |
hsa-miR-151b | −1.31 | 2.65E-04 | 0.0150 | |||
hsa-miR-451b | −5.68 | 3.24E-04 | 0.0150 |
Top down-regulated | Top up-regulated | ||||||
---|---|---|---|---|---|---|---|
MiRNA | log2ratio | P value | FDR | MiRNA | log2ratio | P value | FDR |
hsa-miR-451b | −5.68 | 3.24E-04 | 0.0150 | hsa-miR-370-3p | 1.29 | 3.42E-04 | 0.0150 |
hsa-miR-4482-3p | −4.54 | 9.41E-04 | 0.0256 | hsa-miR-758-3p | 1.35 | 3.09E-03 | 0.0414 |
hsa-miR-548ac | −3.72 | 1.11E-03 | 0.0287 | hsa-miR-136-5p | 1.40 | 3.45E-03 | 0.0437 |
hsa-miR-3688-3p | −2.56 | 1.43E-05 | 0.0016 | hsa-miR-429 | 1.42 | 3.14E-03 | 0.0414 |
hsa-miR-3200-5p | −2.21 | 7.30E-04 | 0.0236 | hsa-miR-654-5p | 1.46 | 7.91E-04 | 0.0236 |
hsa-miR-4732-5p | −1.69 | 5.27E-06 | 0.0010 | hsa-miR-369-5p | 1.47 | 2.72E-03 | 0.0409 |
hsa-miR-3143 | −1.56 | 8.90E-05 | 0.0062 | hsa-miR-4433b-5p | 1.57 | 9.72E-05 | 0.0062 |
hsa-miR-4448 | −1.52 | 2.27E-03 | 0.0403 | hsa-miR-485-3p | 1.63 | 1.43E-05 | 0.0016 |
hsa-miR-3143 | −1.56 | 8.90E-05 | 0.0062 | hsa-miR-337-3p | 1.85 | 1.86E-03 | 0.0380 |
Fold difference between the recurrent and non-recurrent groups. A negative value indicates under-expression, and a positive value indicates over-expression in the recurrent group.