Table 1.
General features of newly sequenced strains
| Organism | Type strain/industrial strain | Size (bp) | Scaffolds | GC content (%) | Coding percentage (%) | CDS | Genes | rRNA | tRNA | Coverage illumina/454 | Sequencing platform | Read length illumina (bp) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Clostridium acetobutylicum DSM 1732 | Industrial strain | 4,091,215 | 55 | 30.69 | 86.96 | 3871 | 3934 | 2 | 60 | 251 | Genome Analyzer IIx | 2 × 112 |
| Clostridium acetobutylicum NCCB 24020 | 4,098,731 | 20 | 30.71 | 87.17 | 3883 | 3970 | 8 | 78 | 157 | MiSeq | 2 × 300 | |
| Clostridium aurantibutyricum DSM 793T | Type strain | 4,922,827 | 221 | 29.87 | 86.04 | 4492 | 4572 | 10 | 70 | 128 | MiSeq | 2 × 300 |
| Clostridium beijerinckii 4J9 | 5,888,124 | 162 | 29.60 | 80.34 | 5200 | 5271 | 7 | 63 | 145 | Genome Analyzer IIx | 2 × 112 | |
| Clostridium beijerinckii ATCC 39058 | 5,953,339 | 302 | 29.57 | 80.32 | 5284 | 5297 | 1 | 11 | 233 | HiSeq2000 | 2 × 100 | |
| Clostridium beijerinckii BAS/B2 | Industrial strain | 5,982,920 | 245 | 29.61 | 81.03 | 5235 | 5294 | 10 | 48 | 307 | HiSeq2000 | 2 × 51 |
| Clostridium beijerinckii BAS/B3/I/124 | Industrial strain | 6,123,550 | 1 | 29.87 | 80.56 | 5310 | 5435 | 43 | 77 | 123/15 | Genome Analyzer IIx/454-GS FLX | 2 × 112 |
| Clostridium beijerinckii DSM 53 | 5,773,247 | 346 | 29.54 | 80.15 | 5057 | 5126 | 12 | 56 | 225 | HiSeq2000 | 2 × 51 | |
| Clostridium beijerinckii DSM 791T | Type strain | 5,781,472 | 264 | 29.66 | 79.99 | 5081 | 5184 | 16 | 86 | 131 | MiSeq | 2 × 300 |
| Clostridium beijerinckii NCP 260 | Industrial strain | 5,968,330 | 242 | 29.61 | 81.03 | 5223 | 5286 | 8 | 54 | 228 | HiSeq2000 | 2 × 51 |
| Clostridium beijerinckii NRRL B-528 | 6,255,488 | 233 | 29.64 | 79.60 | 5554 | 5661 | 17 | 89 | 68 | MiSeq | 2 × 301 | |
| Clostridium beijerinckii NRRL B-591 | Industrial strain | 5,874,824 | 358 | 29.58 | 79.97 | 5162 | 5176 | 2 | 11 | 264 | HiSeq2000 | 2 × 100 |
| Clostridium beijerinckii NRRL B-593 | 6,156,662 | 305 | 29.57 | 79.74 | 5469 | 5525 | 7 | 49 | 192 | HiSeq2000 | 2 × 100 | |
| Clostridium beijerinckii NRRL B-596 | 6,220,133 | 393 | 29.59 | 80.80 | 5531 | 5547 | 2 | 13 | 152 | HiSeq2000 | 2 × 100 | |
| Clostridium beijerinckii 59B | 6,485,394 | 1 | 30.00 | 78.79 | 5522 | 5670 | 49 | 93 | 800 | HiSeq2000/454-GS FLX | 2 × 51 | |
| Clostridium felsineum DSM 794T | Type strain | 5,178,654 | 105 | 29.92 | 86.80 | 4745 | 4831 | 9 | 77 | 82 | MiSeq | 2 × 300 |
| Clostridium pasteurianum DSM 525T | Type strain | 4,352,101 | 1 | 29.94 | 82.54 | 3988 | 4099 | 30 | 81 | 70/17 | MiSeq/454-GS FLX | 2 × 51 |
| Clostridium puniceum DSM 2619T | Type strain | 6,082,167 | 245 | 28.61 | 80.07 | 5305 | 5373 | 13 | 54 | 103 | MiSeq | 2 × 300 |
| Clostridium roseum DSM 6424 | 4,944,863 | 262 | 29.75 | 86.48 | 4510 | 4529 | 1 | 18 | 152 | HiSeq2000 | 2 × 100 | |
| Clostridium roseum DSM 7320T | Type strain | 5,067,725 | 124 | 29.80 | 87.35 | 4607 | 4687 | 8 | 72 | 84 | MiSeq | 2 × 300 |
| Clostridium saccharobutylicum BAS/B3/SW/136 | Industrial strain | 5,108,304 | 1 | 28.67 | 78.90 | 4383 | 4521 | 37 | 93 | 123 | Genome Analyzer IIx/454-GS FLX | 2 × 112 |
| Clostridium saccharobutylicum L1-8 | 5,173,344 | 16 | 28.60 | 78.97 | 4487 | 4596 | 28 | 80 | 157/10 | HiSeq2000/454-GS FLX | 2 × 51 | |
| Clostridium saccharobutylicum NCP 162 | Industrial strain | 4,900,327 | 142 | 28.46 | 78.95 | 4320 | 4381 | 8 | 52 | 198 | Genome Analyzer IIx | 2 × 112 |
| Clostridium saccharobutylicum NCP 195 | Industrial strain | 5,108,176 | 1 | 28.66 | 78.81 | 4377 | 4514 | 37 | 89 | 198 | Genome Analyzer IIx/454-GS FLX | 2 × 112 |
| Clostridium saccharobutylicum NCP 200 | Industrial strain | 5,108,287 | 1 | 28.67 | 78.86 | 4380 | 4518 | 37 | 91 | 92 | Genome Analyzer IIx/454-GS FLX | 2 × 112 |
| Clostridium saccharobutylicum NCP 258 | Industrial strain | 4,950,933 | 1 | 28.66 | 78.67 | 4296 | 4436 | 37 | 85 | 111 | HiSeq2000/454-GS FLX | 2 × 51 |
| Clostridium saccharobutylicum DSM 13864T | Type strain/industrial strain | 5,107,814 | 1 | 28.66 | 79.15 | 4469 | 4593 | 37 | 85 | 100/29 | HiSeq1000/454-GS FLX | 2 × 32 |
| Clostridium saccharoperbutylacetonicum N1-4 (HMT)T | Type strain/industrial strain | 6,666,445 | 2 | 29.54 | 82.91 | 5821 | 5937 | 35 | 70 | 43/15 | Genome Analyzer IIx/454-GS FLX | 2 × 112 |
| Clostridium saccharoperbutylacetonicum N1-504 | 6,219,394 | 2 | 29.55 | 83.02 | 5518 | 5622 | 34 | 60 | 113 | HiSeq2000 | 2 × 50 | |
| Clostridium sp. BL-8 | 6,045,940 | 231 | 29.89 | 81.68 | 5450 | 5466 | 3 | 13 | 176 | HiSeq2000 | 2 × 100 |