Table 3.
List of differentially expressed genes related to bacteriophages, mobile elements and hypothetical functions in E. coli O157:H7 Congo red-positive isolate
| Gene group/genea | Gene IDb | Known or predicted functionb | Fold change | P value |
|---|---|---|---|---|
| Bacteriophage related | ||||
| Z0309 | Putative cI repressor protein for prophage CP-933H | +1.43 | 0.03 | |
| Z1460 | Hypothetical protein encoded by bacteriophage Bp-933 W | −4.12 | 0.01 | |
| Z1922 | Hypothetical protein encoded by bacteriophage CP-933X | −2.23 | −0.03 | |
| Z1923 | Hypothetical protein encoded by bacteriophage CP-933X | −2.38 | −0.04 | |
| intO | Z2036 | Integrase for bacteriophage CP-933O | −1.26 | 0.01 |
| coxT | Z2970 | Regulator for prophage CP-933 T | +4.42 | 0.04 |
| Z2971 | Phage CP-933 T encoded hypothetical protein | +3.48 | 0.03 | |
| Z2972 | Phage CP-933 T encoded hypothetical protein | +3.70 | 0.01 | |
| Z2973 | Phage CP-933 T encoded hypothetical protein | +4.10 | 0.01 | |
| Z2974 | Phage CP-933 T encoded hypothetical protein | +2.83 | 0.04 | |
| Z3305 | Bacteriophage CP-933 V encoded protein | −1.62 | 0.01 | |
| Z4330 | Transposase | +1.94 | 0.03 | |
| Hypothetical | ||||
| Z0005 | Unknown | −7.49 | 4.7E-08 | |
| yagU | Z0353 | Putative acid resistance | 2.29 | 0.004 |
| yagY | Z0359 | Predicted pilus chaperone (cryptic) | −2.13 | 0.04 |
| yagZ | Z0360 | Predicted pilus major subunit | −2.83 | 0.001 |
| yaiY | Z0475 | Predicted inner membrane protein | −33.49 | 1.6E-12 |
| yaiE | Z0487 | Unknown | −1.49 | 0.01 |
| yajI | Z0513 | Unknown | −3.71 | 1.3E-06 |
| ybcI | Z0682 | Predicted inner membrane protein | −2.48 | 0.004 |
| Z0879 | Unknown | −2.95 | 0.04 | |
| ybjO | Z1085 | Predicted inner membrane protein | −2.35 | 4.3E-04 |
| ybjX | Z1112 | Unknown | −1.51 | 0.01 |
| ymcD | Z1404 | Unknown | +1.48 | 3.7E-03 |
| Z1528 | Unknown | +2.11 | 0.03 | |
| yceI | Z1692 | Unknown | −2.24 | 5.0E-03 |
| yceB | Z1700 | Unknown | −1.89 | 5.0E-04 |
| ycfJ | Z1749 | Unknown | −24.98 | 1.5E-14 |
| Z2283 | Unknown | −4.39 | 3.0#-06 | |
| ydeH | Z2292 | Unknown | +2.69 | 2.0E-04 |
| ydeF | Z2308 | Unknown | +2.83 | 2.7E-06 |
| Z2421 | Unknown | +1.79 | 0.03 | |
| yoaG | Z2838 | Unknown | +2.54 | 0.02 |
| Z2839 | Unknown | +2.36 | 0.04 | |
| Z2893 | Unknown | −1.61 | 0.01 | |
| rcnB | Z3275 | Putative nickel/cobalt efflux protein | −1.61 | 0.02 |
| ypeC | Z3656 | Unknown | −23.74 | 1.9E-17 |
| ypfG | Z3722 | Unknown | −4.58 | 9.0E-09 |
| Z3965 | Unknown | −2.33 | 1.5E-03 | |
| Z4126 | Unknown | −4.31 | 3.0E-04 | |
| Z4151 | Unknown | −3.84 | 7.4E-07 | |
| Z4267 | Unknown | +5.52 | 2.3E-03 | |
| Z4268 | Unknown | +4.92 | 4.3E-06 | |
| yggG | Z4280 | Unknown | −1.71 | 0.02 |
| Z4318 | Unknown | +1.30 | 0.04 | |
| ygjT | Z4441 | Unknown | −2.25 | 5.0E-03 |
| yhaM | Z4462 | Unknown | +2.34 | 0.03 |
| yiaB | Z4988 | Unknown | −4.71 | 5.0E-03 |
| yiiF | Z5432 | Unknown | +1.52 | 0.04 |
| yjcO | Z5677 | Unknown | +1.28 | 0.04 |
| Z5694 | Unknown | −12.64 | 6.7E-09 | |
| yjdA | Z5711 | Putative DNA replication function | +2.23 | 6.4E-06 |
| yjcJ | Z5712 | Unknown | +2.79 | 9.4E-05 |
| yjfN | Z5795 | Unknown | −2.58 | 8.0E-04 |