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. 2017 Mar 9;7:44209. doi: 10.1038/srep44209

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Copyright © 2017, The Author(s)

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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Phylogenetic analyses of PEDV strains based on the nucleotide sequences of the full-length genome and the ORF1a, ORF1b, S, ORF3, E, M, and N genes. Phylogenetic trees of (a) the full-length genome; (b) the ORF1a gene; (c) the ORF1b gene; (d) the S gene; (e) the ORF3 gene; (f) the E gene; (g) the M gene; (h) the N gene. The evolutionary history was inferred using the neighbour-joining method. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) are shown next to the branches. The evolutionary distances were computed using the Jukes-Cantor method and are presented as the number of base substitutions per site. The evolutionary analyses were conducted using MEGA5 software.