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. 2017 Jan 29;18(2):264. doi: 10.3390/ijms18020264

Table 1.

Features of techniques used to detect alterations from circulating tumoral DNA (ctDNA).

Techniques Limit of Detection Number of Targets Type of Alteration Detection Reference
PCR-based approaches
  COLD-PCR 0.10% 1 SNV, indels [34]
  PNA-LNA 0.10% 1 SNV, indels [35]
  Probes improvement 0.01%–0.10% 1 SNV, indels [36,37]
Digital PCR 0.01%–0.10% 1 to 4 SNV, indels, CNV [38,39,40]
BEAMing 0.01% 1 to 20 SNV, indels [41,42]
NGS-based approaches
  Deep sequencing 0.02% Panel SNV, indels [43]
  Base position-error rate correction 0.003% Panel SNV, indels [44]
  TAm-Seq 2.00% Panel SNV, indels [45]
  CAPP-Seq 0.02% Panel SNV, indels, CNV, rearrangements [46]
  cSMART 0.01% Panel SNV, indels, rearrangements [47,48]
  Digital sequencing 0.10% Panel SNV, indels, CNV, rearrangements [49]
  Bias-Corrected Targeted NGS 0.10% Panel SNV, indels, CNV, rearrangements [50]
SERS-nanotags 0.10% 1 to 3 SNV [51]
UltraSEEK 0.10% 1 to 7 SNV, indels [52]

PCR, polymerase chain reaction; COLD-PCR, coamplification at lower denaturation temperature PCR; PNA-LNA, peptide nuclei acid-locked nucleic acid; BEAMing, beads, emulsion, amplification, and magnetics; NGS, next-generation sequencing; TAm-Seq, tagged-amplicon deep sequencing; CAPP-Seq, cancer personalized profiling by deep Sequencing; SERS, surface-enhanced raman spectroscopy; UltraSEEK, high-throughput, multiplexed, ultrasensitive mutation detection; SNV, single nucleotide variation; CNV, copy number variation.