Figure 2.

Comparison between the draft genome assembly and the physical D. serrata genome map, image is adapted from Stocker et al. (2012). Genes in red were mapped by Drosopoulou and Scouras (1995, 1998), Drosopoulou et al. (1996, 1997, 2002), and Pardali et al. (1996). Genes in blue are also included in the linkage map produced by Stocker et al. (2012). Thin red lines are inversions found by Stocker et al. (2004) and thin black lines are inversions found by Mavragani-Tsipidou et al. (1990). Contig3208 (shown in red), was split into three parts based on the misassembly; parts 1 and 3 aligned with D. melanogaster 3R and part 2 aligned with 3L (Figure 1). Markers Act88F and hsp70 were not mapped to contigs because the former appears twice and nomenclature changes meant we could not be certain exactly which gene hsp70 was referring to.