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. 2017 Jan 24;7(3):935–942. doi: 10.1534/g3.116.037895

Table 3. Mean breeding value accuracy estimates (r^) for white spruce tree height and wood density using pedigree-based (A) and combined pedigree marker-based (H) relationship estimators at 0, 25, 50, 75, and 100% genotyping effort for three classes of individuals: maternal parent, genotyped progeny, and nongenotyped progeny.

Estimator (GE) (%) Class HT WD
r^ r^
A (0%) Maternal 0.521 (NA) 0.635 (NA)
Genotyped NA NA
Nongenotyped 0.474 (NA) 0.605 (NA)
H (25%) Maternal 0.525 (0.0007) 0.635 (0.0007)
Genotyped 0.499 (0.0008) 0.626 (0.0007)
Nongenotyped 0.474 (0.0003) 0.604 (0.0002)
H (50%) Maternal 0.527 (0.0010) 0.635 (0.0009)
Genotyped 0.514 (0.0006) 0.640 (0.0004)
Nongenotyped 0.473 (0.0004) 0.602 (0.0003)
H (75%) Maternal 0.530 (0.0007) 0.635 (0.0007)
Genotyped 0.528 (0.0004) 0.651 (0.0003)
Nongenotyped 0.475 (0.0003) 0.601 (0.0002)
H (100%) Maternal 0.539 (NA) 0.635 (NA)
Genotyped 0.536 (NA) 0.661 (NA)
Nongenotyped NA NA

SD of sampling distribution in parentheses. HT, height in cm; WD, wood density in kg/m3; r^,breeding value accuracy estimates; A, pedigree-based relationship estimator; NA, not applicable; H, combined pedigree marker-based relationship estimator.