Bacterial and Virus Strains |
|
Endura competent E. Coli cells |
Lucigen |
60242-0 |
Feeding bacteria HT115 E. Coli cells |
Gift from Eric Meyer (ENS, Paris) |
HT115 |
Klebsiella pneumoniae non-virulent strain, food source for Paramecium
|
Gift from Eric Meyer (ENS, Paris) |
N/A |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Wheat Grass Powder |
Pines International, Lawrence, KS |
N/A |
β-sitosterol |
Calbiochem, Millipore |
CAS 83-46-5 |
567152 |
T4 DNA Ligase |
New England Biolabs |
M0202 |
|
Critical Commercial Assays |
|
TRI Reagent |
Sigma-Aldrich |
T3809 |
GoScript Reverse Transcription kit |
Promega |
A5000 |
GoTaq G2 DNA polymerase |
Promega |
M8296 |
Wizard® SV Gel and PCR Clean-Up System |
Promega |
A9281 |
pGEM®-T Easy Vector System |
Promega |
A3600 |
Illumina TruSeq small RNA kit |
Illumina |
RS-200-0012 |
|
Deposited Data |
|
Ligase IV silencing and empty vector control silencing small RNA data |
This work |
GenBank, accession number ENA: SUB2107094 |
|
Experimental Models: Organisms/Strains |
|
Paramecium tetraurelia strain 51 |
Gift from Eric Meyer (ENS, Paris) |
N/A |
|
Oligonucleotides |
|
See Table S1 for complete list of oligonucleotides |
This paper |
N/A |
|
Recombinant DNA |
|
Plasmid L440 for feeding bacteria |
Gift from Eric Meyer (ENS, Paris) |
N/A |
Dcl5 silencing construct |
Sandoval et al., 2014 |
N/A |
Ligase IV silencing constructs |
This work, see Table S1
|
N/A |
|
Software and Algorithms |
|
Geneious 8.1.8 |
http://www.geneious.com/ |
N/A |