Table 1.
Overall performance of MOST in sevenfold cross-validation
Active data defined by | Performance | ||||||
---|---|---|---|---|---|---|---|
pKi ≥ 5 | Accuracy | ||||||
Naïve Bayes | Logistic Regression | Random Forests | |||||
Morgan | FP2 | Morgan | FP2 | Morgan | FP2 | ||
Explicit Ki | 0.927 ± 0.003 | 0.929 ± 0.003 | 0.948 ± 0.003 | 0.949 ± 0.002 | 0.948 ± 0.001 | 0.946 ± 0.004 | |
Implicit Ki | 0.939 ± 0.002 | 0.937 ± 0.003 | 0.948 ± 0.003 | 0.949 ± 0.003 | 0.950 ± 0.002 | 0.949 ± 0.003 | |
MCC | |||||||
Naïve Bayes | Logistic Regression | Random Forests | |||||
Morgan | FP2 | Morgan | FP2 | Morgan | FP2 | ||
Explicit Ki | 0.352 ± 0.013 | 0.345 ± 0.017 | 0.495 ± 0.010 | 0.484 ± 0.025 | 0.530 ± 0.017 | 0.504 ± 0.032 | |
Implicit Ki | 0.554 ± 0.008 | 0.543 ± 0.022 | 0.558 ± 0.013 | 0.585 ± 0.023 | 0.585 ± 0.014 | 0.560 ± 0.023 | |
pKi ≥ 6 | Accuracy | ||||||
Naïve Bayes | Logistic Regression | Random Forests | |||||
Morgan | FP2 | Morgan | FP2 | Morgan | FP2 | ||
Explicit Ki | 0.848 ± 0.004 | 0.842 ± 0.002 | 0.866 ± 0.002 | 0.862 ± 0.002 | 0.861 ± 0.004 | 0.853 ± 0.004 | |
Implicit Ki | 0.860 ± 0.004 | 0.855 ± 0.004 | 0.867 ± 0.003 | 0.863 ± 0.003 | 0.867 ± 0.004 | 0.862 ± 0.004 | |
MCC | |||||||
Naïve Bayes | Logistic Regression | Random Forests | |||||
Morgan | FP2 | Morgan | FP2 | Morgan | FP2 | ||
Explicit Ki | 0.561 ± 0.014 | 0.540 ± 0.009 | 0.617 ± 0.009 | 0.602 ± 0.007 | 0.609 ± 0.013 | 0.581 ± 0.013 | |
Implicit Ki | 0.624 ± 0.011 | 0.610 ± 0.612 | 0.632 ± 0.012 | 0.618 ± 0.011 | 0.632 ± 0.013 | 0.618 ± 0.012 |