Table 3.
List of outbreaks.
| Outbreak code | Species | In outbreaka | References |
|---|---|---|---|
| 1308MDGX6-1 | L. monocytogenes | 39, 7, 0 | Chen et al., submitted |
| 1408MLGX6-3WGS | L. monocytogenes | 19, 64, 1 | Jackson et al., 2015; Timme et al., in review |
| 1411MLGX6-1WGS | L. monocytogenes | 28, 16, 0 | CDC, 2015 |
| 1504MLEXH-1 | E. coli | 17, 2, 0 | Tataryn et al., 2014 |
| 1405WAEXK-1 | E. coli | 6, 4, 4 | CDC, 2014; Timme et al., in review |
| 1407MNEXD-1 | E. coli | 6, 10, 1 | Health MDo, 2014 |
| 1203NYJAP-1 | S. enterica | 55, 8, 0 | Hoffmann et al., 2016; Timme et al., in review |
| 1409MLJN6-1 | S. enterica | 9, 29, 0 | N/A |
| 1410MLJBP-1 | S. enterica | 5, 10, 0 | N/A |
| 0810PADBR-1 | C. jejuni | 14, 111, 0 | Marler-Clark, 2008; Timme et al., in review |
| 1509VTDBR-1 | C. jejuni | 8, 8, 0 | N/A |
| 1602VTDBR-1 | C. jejuni | 6, 10, 0 | N/A |
a
The number of isolates associated with the outbreak, the number of isolates not associated with the outbreak, and the number of isolates with unknown status. Those with unknown status were not used in calculations for tree sensitivity and specificity.
Each outbreak is shown with counts of outbreak-associated and non-outbreak-associated isolates.