Table 2. Power comparison under misspecified allele frequencies.

	Specified allele frequency	Marker
Score		1-3	4-6	7-9	10-11	12-14	15-17	18-20
lod >2	0.2	40	42	57	74	71	43	40
lod >2	0.5	52	58	73	83	78	61	55
lod >3	0.2	13	21	31	44	37	20	14
lod >3	0.5	23	30	50	65	57	31	23

Frequencies at which linkage is detected in the 100 data sets are shown.