Table 4. Observed transcripts that match ME for >80% of their length.
| Chr. | % length* | Length of cds | ID | ID | % match† | Listing‡ | Record§ |
|---|---|---|---|---|---|---|---|
| 1 | 98.25 | 171 | NM_016646 | LOC51336 | 82.7 | L1M3 | |
| 1 | 96.00 | 150 | XM_352936 | PRO2012 | 78.1 | L1ME | Record removed |
| 2 | 100.00 | 384 | NM_175853 | LOC150759 | 78.7 | L1P | |
| 2 | 100.00 | 375 | XM_208704 | LOC283517 | 97.9 | SVA | Record removed |
| 2 | 100.00 | 723 | XM_351431 | LOC375197 | 95.8 | L1PA4 | Record removed |
| 2 | 95.83 | 288 | XM_173068 | LOC253584 | 85.4 | THE1C MLT1B | |
| 2 | 92.33 | 300 | XM_351509 | LOC375299 | 90.0 | L1P Tigger2 | Record removed |
| 2 | 86.38 | 279 | XM_291017 | LOC339793 | 89.8 | L1P MLT1E2 | |
| 3 | 93.44 | 183 | NM_018629 | PRO2533 | 76.3 | MLT1G3 | Record removed |
| 3 | 91.54 | 402 | XM_353342 | LOC375388 | 79.9 | MLT2B4 | Record removed |
| 3 | 83.66 | 153 | NM_014135 | PRO0641 | 78.1 | MLT1H | Record removed |
| 4 | 99.95 | 1974 | XM_209656 | LOC285550 | 89.8 | Charlie9 | |
| 4 | 97.40 | 1692 | NM_024534 | FLJ12684 | 72.6 | MER34-int | |
| 5 | 87.04 | 486 | NM_173668 | FLJ34836 | 89.1 | LTR12C BaEV-int | MER50 |
| 5 | 86.45 | 369 | XM_353366 | LOC375433 | 81.2 | L1MC/D LTR5B | Record removed |
| 6 | 99.74 | 387 | XM_291181 | LOC340211 | 97.4 | L1P | |
| 6 | 99.60 | 249 | NM_018572 | PRO1051 | 87.9 | L1P | Record removed |
| 6 | 84.97 | 366 | NM_178534 | FLJ37940 | 85.7 | HERVL18 | Record removed |
| 7 | 97.72 | 1491 | NM_032203 | GTF2IRD2 | 82.4 | Charlie8 | |
| 7 | 94.02 | 1722 | NM_145111 | DKFZp727G1 | 86.4 | Charlie9 | |
| 8 | 97.99 | 348 | XM_351783 | LOC375668 | 86.8 | Tigger3 (Golem) | FLAM_C removed |
| 8 | 85.35 | 273 | XM_353456 | LOC375664 | 70.3 | L2 | Record removed |
| 9 | 100.00 | 375 | XM_209180 | LOC284397 | 97.1 | SVA | |
| 9 | 100.00 | 342 | XM_351803 | LOC375700 | 87.4 | L1P4 | Record removed |
| 9 | 100.00 | 363 | XM_353472 | LOC375692 | 82.8 | LTR1B | Record removed |
| 9 | 92.10 | 291 | XM_353479 | LOC375732 | 73.1 | SST1 | Record removed |
| 9 | 92.10 | 291 | XM_353476 | LOC375716 | 72.8 | SST1 | Record removed |
| 9 | 91.75 | 291 | XM_353477 | LOC375726 | 72.6 | SST1 | Record removed |
| 9 | 90.14 | 426 | NM_030898 | FLJ21673 | 84.1 | AluSg/x L2 | FLAM_A record removed |
| 9 | 90.11 | 354 | XM_353493 | LOC375772 | 93.1 | MLT2A1 | Record removed |
| 9 | 88.52 | 270 | XM_353481 | LOC375740 | 77.4 | REP522 | Record removed |
| 9 | 88.52 | 270 | XM_353480 | LOC375738 | 77.8 | REP522 | Record removed |
| 9 | 88.52 | 270 | XM_353478 | LOC375727 | 77.4 | REP522 | Record removed |
| 10 | 99.67 | 600 | NM_178512 | FLJ37201 | 73.2 | Tigger4 (Zombi) | |
| 10 | 99.57 | 231 | XM_352893 | LOC374280 | 90.4 | MER11B | Record removed |
| 10 | 98.10 | 105 | NM_173577 | MGC45541 | 86.4 | AluJo/FRAM | |
| 1 | 85.21 | 2082 | NM_021211 | LOC58486 | 68.3 | Charlie1 | |
| 12 | 85.48 | 303 | XM_350891 | LOC374483 | 93.8 | HERVK22 | Record removed |
| 13 | 99.31 | 288 | NM_138474 | LOC144845 | 80.1 | L1PA13 | Record removed |
| 13 | 97.80 | 501 | NM_173604 | FLJ25694 | 87.4 | HERVE | |
| 13 | 89.24 | 381 | NM_153251 | FLJ25952 | 85.5 | AluSg/x AluSx | |
| 13 | 80.13 | 297 | XM_353050 | LOC374511 | 77.0 | MSTC MIR | Record removed |
| 16 | 100.00 | 75 | NM_030970 | MGC3771 | 90.7 | AluSp | |
| 19 | 100.00 | 144 | NM_178523 | MGC45556 | 91.0 | L1PA10 | Record removed |
| 19 | 88.17 | 372 | XM_294914 | LOC339358 | 81.2 | MER41-int | MER41B MER77 |
| 19 | 84.00 | 225 | NM_138781 | LOC113386 | 77.8 | HERVK3 | |
| 20 | 100.00 | 375 | XM_209370 | LOC284806 | 89.1 | SVA | Record removed |
| 21 | 88.89 | 378 | XM_211658 | LOC284837 | 75.3 | L1MB8 | Record removed |
| X | 100.00 | 372 | NM_153016 | FLJ30672 | 87.8 | THE1-int |
Chr., chromosome.
*
Percent of length of cds that is ME.
†
Percent sequence match of cds to ME.
‡
repeatmasker listing.
§
Added on March 2, 2004, when removals were found.