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. 2016 Oct 13;11(2):261–269. doi: 10.5009/gnl15389

Table 1.

Primer Sequences Used in qPCR Analysis

Gene Primer sequence Tm, °C
Oct4-F 5′-GATGTGGTCCGAGTGTGGTT-3′ 60
Oct4-R 5′-AGCCTGGGGTACCAAAATGG-3′
Nanog-F 5′-AAGGCCTCAGCACCTACCTA-3′ 60
Nanog-R 5′-TGCACCAGGTCTGAGTGTTC-3′
Sox2-F 5′-GCCCTGCAGTACAACTCCAT-3′ 60
Sox2-R 5′-GACTTGACCACCGAACCCAT-3′
Foxa2-F 5′-ATTGCTGGTCGTTTGTTGTG-3′ 60
Foxa2-R 5′-CCTCGGGCTCTGCATAGTAG-3′
Sox17-F 5′-GGCGCAGCAGAATCCAGA-3′ 60
Sox17-R 5′-CCACGACTTGCCCAGCAT-3′
Goosecoid-F 5′-GAGGAGAAAGTGGAGGTCTGGTT-3′ 60
Goosecoid-R 5′-CTCTGATGAGGACCGCTTCTG-3′
Msx1-F 5′-CGAGAGGACCCCGTGGATGCAGAG-3′ 60
Msx1-R 5′-GGCGGCCATCTTCAGCTTCTCCAG-3′
Sox1-F 5′-GGAATGGGAGGACAGGATTT-3′ 60
Sox1-R 5′-AACAGCCGGAGCAGAAGATA-3′
Map2-F 5′-CAGGTGGCGGACGTGTGAAAATTGAGAGTG-3′ 60
Map2-R 5′-CACGCTGGATCTGCCTGGGGACTGTG-3′
GAPDH-F 5′-GGACTCATGACCACAGTCCATGCC-3′ 60
GAPDH-R 5′-TCAGGGATGACCTTGCCCACAG-3′
Endo-Oct4-F 5′-GACAGGGGGAGGGGAGGAGCTAGG-3′ 60
Endo-Oct4-R 5′-CTTCCCTCCAACCAGTTGCCCCAAAC-3′
Endo-Sox2-F 5′-GGGAAATGGGAGGGGTGCAAAAGAGG-3′ 60
Endo-Sox2-R 5′-TTGCGTGAGTGTGGATGGGATTGGTG-3′
Endo-Klf4-F 5′-ACGATCGTGGCCCCGGAAAAGGACC-3′ 60
Endo-Klf4-R 5′-TGATTGTAGTGCTTTCTGGCTGGGCTCC-3′
Endo-Myc-F 5′-GCGTCCTGGGAAGGGAGATCCGGAGC-3′ 60
Endo-Myc-R 5′-TTGAGGGGCATCGTCGCCGGAGGCTG-3′
Exo-Oct4-F 5′-CAACGAGAGGATTTTGAGGCT-3′ 60
Exo-Sox2-F 5′-TGCAGTAGAACTCCATGACCA-3′
Exo-Klf4-F 5′-TGCGGCAAAACCTACACAAAG-3′
Exo-Myc-F 5′-CAACAACCGAAATGCACCAGCCCCAG-3′
pMX-Tg-R 5′-TACAGGTGGGGTCTTTCATTC-3′
hGAPDH-F 5′-AACAGCCTCAAGATCATCAGC-3′ 60
hGAPDH-R 5′-TTGGCAGGTTTTTCTAGACGG-3′

qPCR, real-time polymerase chain reaction; Tm, annealing temperature; F, forward; R, reverse.