Table 1. Comparative sequence analysis of the TRPV1 5'UTR variants.
TRPV1v3 |ref|NM_080706.3| | CTGCCGCTCACCCTATTCCAGGGACA-CAGTCTGCTTGGCTCTTCTGGAC | 49 |
TRPV1v4 |ref|NM_080705.3| | -----------------------GCA-GAGTGTGC--AG----TATAGAT | 20 |
TRPV1v1 |ref|NM_080704.3| | ----------------------GGCTCAGGCAGGCCTGG----CCCAGAG | 24 |
TRPV1v0 |ref|NM_018727.5| | -----------------------GCCCGGG--------A----CCC---- | 11 |
gi|117306163|ref|NM_080706.3| | TGAGCCATCCTCATCACCGAGATCCTCCCTGAATTCAGCCCACGACAGCC | 99 |
gi|117306162|ref|NM_080705.3| | TCAGCGTTTGTCG--ACTGA--------CTGAATG------ATAGCA-CA | 53 |
gi|117306161|ref|NM_080704.3| | TCA-CGCTGGCAACCAC-GAG------TTTGGGAA------GCAGTCGTA | 60 |
gi|117306160|ref|NM_018727.5| | -CA-CGGAGGCG------------------GGGAG------AC------- | 28 |
gi|117306163|ref|NM_080706.3| | ACCCCGGCCGTTTTCCTTGTTCTGTGTGGGGAGGGAGGCAGCGCGGTGGT | 149 |
gi|117306162|ref|NM_080705.3| | ATCCCGGCTGCTTCC--TGTT----------------------------- | 72 |
gi|117306161|ref|NM_080704.3| | TTCTCTCTCTCTCTCTCTCTC----------------------------- | 81 |
gi|117306160|ref|NM_018727.5| | ----CACTCT---------------------------------------- | 34 |
gi|117306163|ref|NM_080706.3| | TATCAACCTCACCCTGCAGAGGAGGCACCTGAGGCCCAGAGACGAGGAGG | 199 |
gi|117306162|ref|NM_080705.3| | -------------------------------------------------G | 73 |
gi|117306161|ref|NM_080704.3| | ----------------------------------------------TCTC | 85 |
gi|117306160|ref|NM_018727.5| | ----------------------------------------------TCTC | 38 |
gi|117306163|ref|NM_080706.3| | GATGGGTCTAACCCAGAACCACAGATGGC-TCTGAGCCGGGGGCCTGTCC | 248 |
gi|117306162|ref|NM_080705.3| | GCTGGGTTT-----------------GGT-T------------------- | 86 |
gi|117306161|ref|NM_080704.3| | TCTCAGTATCCATGA----------CAGTGTGAT---------------- | 109 |
gi|117306160|ref|NM_018727.5| | CCACACGAGCC--------------CAG---------------------- | 52 |
gi|117306163|ref|NM_080706.3| | ACCCTCCCAGGCCGACGTCAGTGGCCGCAGGA------CTGCCTGGGCCC | 292 |
gi|117306162|ref|NM_080705.3| | -----------------------------GGA------CTG---GGACCC | 98 |
gi|117306161|ref|NM_080704.3| | -----------------------------GGAGAGTCTCTGCC-GTGCC- | 128 |
gi|117306160|ref|NM_018727.5| | ------------------------------------CTCTCCC------- | 59 |
gi|117306163|ref|NM_080706.3| | TGCTAGGCCTGCTCACCTCTGAGGCCTCTGGGGTGAGAGGTTCAGTCCTG | 342 |
gi|117306162|ref|NM_080705.3| | --------------------------------GTCAGAGG---------- | 106 |
gi|117306161|ref|NM_080704.3| | --------------------------------ATCTGGGATGC------- | 139 |
gi|117306160|ref|NM_018727.5| | ---------------------------------TTCGAGTAGC------- | 69 |
gi|117306163|ref|NM_080706.3| | GAAACACTTCAGTTCTAGGGGGCTGGGGGC----AGCAGCAAGTTGGAGT | 388 |
gi|117306162|ref|NM_080705.3| | AAAA-----------------------GGC----AAC------------- | 116 |
gi|117306161|ref|NM_080704.3| | AAACCGTCCCTGTGTTCCCCACGTCCAGGCCGTAGAT------------- | 176 |
gi|117306160|ref|NM_018727.5| | AA----------------CCGCCTTCAAGC-------------------- | 83 |
gi|117306163|ref|NM_080706.3| | TTTGGGGTACCCTGCTTCACAGGGC----CCTTGGCAAGGAGGGCAGGTG | 434 |
gi|117306162|ref|NM_080705.3| | -----------------------GC----CGCTGACAAAGAACATTGCCG | 139 |
gi|117306161|ref|NM_080704.3| | -----------------------GCTCCCCGCCGGTCAGTCACTTAGTCG | 203 |
gi|117306160|ref|NM_018727.5| | ---------------------------------------TCAC------- | 87 |
gi|117306163|ref|NM_080706.3| | GGGTCTAAGGACAAGCAGTCCTTAC---TTTGGGAGT---CAACCCCGGC | 478 |
gi|117306162|ref|NM_080705.3| | A-----AAGG----------TTCA------TGGGAG------GCTCCGGC | 162 |
gi|117306161|ref|NM_080704.3| | T-----CAGATCG-------CCCGT---CCTGGTATCACAGTGCTTCTGT | 238 |
gi|117306160|ref|NM_018727.5| | --------AAGCA-------CCCGTGGGCCTGGGGT----GTGCCTGCGT | 118 |
gi|117306163|ref|NM_080706.3| | GTGGTGGCTGCTGCAG---GTTGCACACTGGGCCACAGAGGATCCAGCAA | 525 |
gi|117306162|ref|NM_080705.3| | ----------TAACAG---GTTGCACACTGGGCCACAGAGGATCCAGCAA | 199 |
gi|117306161|ref|NM_080704.3| | ------------TCAG---GTTGCACACTGGGCCACAGAGGATCCAGCAA | 273 |
gi|117306160|ref|NM_018727.5| | ------------CTAGCTGGTTGCACACTGGGCCACAGAGGATCCAGCAA | 156 |
gi|117306163|ref|NM_080706.3| | GGATGAAGAAATGGAGCAGCACAGACTTGGGGGCAGCTGCGGACCCACTC | 575 |
gi|117306162|ref|NM_080705.3| | GGATGAAGAAATGGAGCAGCACAGACTTGGGGGCAGCTGCGGACCCACTC | 249 |
gi|117306161|ref|NM_080704.3| | GGATGAAGAAATGGAGCAGCACAGACTTGGGGGCAGCTGCGGACCCACTC | 323 |
gi|117306160|ref|NM_018727.5| | GGATGAAGAAATGGAGCAGCACAGACTTGGGGGCAGCTGCGGACCCACTC | 206 |
Gene bank accession number (gi and NM_) are indicated.