Extended Data Table 3. Significantly differentially expressed genes between PD-1- and PD-1hi cell populations.
| Gene | logFC PD-1neg vs PD-1hi | p-value | adjusted p-value |
|---|---|---|---|
| PD-1 | -6.39 | 1.03E-17 | 2.07E-13 |
| TOX | -3.97 | 7.21E-13 | 7.21E-09 |
| ITM2A | -1.21 | 4.54E-10 | 3.02E-06 |
| TIGIT | -1.92 | 1.03E-09 | 5.15E-06 |
| MAF | -1.42 | 4.43E-09 | 1.77E-05 |
| CA6 | 3.05 | 6.13E-09 | 2.04E-05 |
| CST7 | -3.16 | 1.47E-08 | 3.80E-05 |
| SCML1 | 3.90 | 1.71E-08 | 3.80E-05 |
| SCO2 | -5.20 | 1.67E-08 | 3.80E-05 |
| CDCA7 | -4.50 | 2.56E-08 | 5.12E-05 |
| RAB37 | -1.57 | 6.90E-08 | 1.15E-04 |
| ICA1 | -2.95 | 2.32E-07 | 3.24E-04 |
| EZH2 | -3.02 | 2.43E-07 | 3.24E-04 |
| GZMK | -2.75 | 2.68E-07 | 3.35E-04 |
| MAP3K9 | -2.36 | 4.44E-07 | 5.22E-04 |
| PFN1 | -1.46 | 7.05E-07 | 7.05E-04 |
| SLAMF6 | -1.24 | 8.88E-07 | 8.18E-04 |
| EPSTI1 | -2.04 | 8.99E-07 | 8.18E-04 |
| NEFL | 4.05 | 1.14E-06 | 9.90E-04 |
| CHN1 | -3.45 | 1.22E-06 | 1.01E-03 |
| UBE2L6 | -1.23 | 1.55E-06 | 1.14E-03 |
| FANCI | -2.79 | 1.77E-06 | 1.26E-03 |
| PSMA4 | -1.42 | 2.22E-06 | 1.48E-03 |
| TOX2 | -3.64 | 2.72E-06 | 1.70E-03 |
| FABP5 | -2.44 | 3.07E-06 | 1.81E-03 |
| ANXA2 | -1.27 | 3.38E-06 | 1.93E-03 |
| CTLA4 | -1.74 | 4.31E-06 | 2.33E-03 |
| PLAG1 | 3.60 | 4.77E-06 | 2.51E-03 |
| HVCN1 | -3.52 | 5.08E-06 | 2.61E-03 |
| FAM210A | -2.78 | 5.37E-06 | 2.68E-03 |
| ALOX5 | 3.44 | 5.88E-06 | 2.80E-03 |
| RGS1 | -1.20 | 6.09E-06 | 2.83E-03 |
| MYL6B | -3.07 | 8.27E-06 | 3.65E-03 |
| CEP128 | -3.16 | 8.18E-06 | 3.65E-03 |
| ENC1 | -3.61 | 8.40E-06 | 3.65E-03 |
| MIS18BP1 | -2.07 | 8.89E-06 | 3.78E-03 |
| F5 | -1.46 | 1.00E-05 | 4.05E-03 |
| FN1 | 2.50 | 1.07E-05 | 4.05E-03 |
| CXCR3 | -3.02 | 1.06E-05 | 4.05E-03 |
| ASB13 | 3.35 | 1.06E-05 | 4.05E-03 |
| HIST2H2BF | 3.68 | 9.85E-06 | 4.05E-03 |
| PRR5L | -2.17 | 1.10E-05 | 4.08E-03 |
| KRT72 | 3.19 | 1.24E-05 | 4.43E-03 |
| BZRAP1 | -1.97 | 1.37E-05 | 4.81E-03 |
| DUSP2 | -1.46 | 1.55E-05 | 5.33E-03 |
| DHFR | -2.73 | 1.74E-05 | 5.62E-03 |
| FBXO41 | -2.41 | 1.94E-05 | 6.14E-03 |
| CCDC86 | -3.43 | 1.99E-05 | 6.21E-03 |
| FCRL3 | -1.77 | 2.06E-05 | 6.27E-03 |
| AKR1C3 | -3.31 | 2.07E-05 | 6.27E-03 |
| SHMT2 | -1.53 | 2.17E-05 | 6.38E-03 |
| DDX54 | -1.73 | 2.21E-05 | 6.41E-03 |
| UBE2A | -1.32 | 2.88E-05 | 7.68E-03 |
| ANXA9 | 2.92 | 2.85E-05 | 7.68E-03 |
| TUBB4B | -1.24 | 3.12E-05 | 8.10E-03 |
| TIMELESS | -2.61 | 3.24E-05 | 8.26E-03 |
| CCL5 | -3.36 | 3.26E-05 | 8.26E-03 |
| UQCRC1 | -1.29 | 3.42E-05 | 8.44E-03 |
| TBC1D4 | -1.30 | 3.49E-05 | 8.51E-03 |
| SYT11 | -1.38 | 3.88E-05 | 9.23E-03 |
| PMAIP1 | -2.19 | 3.84E-05 | 9.23E-03 |
| DIRC2 | -2.78 | 4.00E-05 | 9.30E-03 |
| SOX8 | 1.94 | 4.26E-05 | 9.80E-03 |
| SPG20 | 1.80 | 4.50E-05 | 9.90E-03 |
| DPP3 | -1.96 | 4.39E-05 | 9.90E-03 |
| DUSP4 | -2.50 | 4.50E-05 | 9.90E-03 |