Table 2. Data summary from RNA-seq.
Sample1 | Raw reads | Clean reads | Clean bases | Valid ratio (%) | Q30(%) | GC content (%) | Total mapped reads | Mapping ratio (%)2 |
---|---|---|---|---|---|---|---|---|
M4W-1 | 63390474 | 59877776 | 8976603064 | 94.40 | 92.44 | 50.50 | 42743796 | 71.39 |
M4W-2 | 62481624 | 59772130 | 8961396183 | 95.61 | 93.81 | 50.50 | 42391042 | 70.92 |
M4W-3 | 60332474 | 55438788 | 8310479464 | 91.82 | 89.62 | 49.50 | 39977813 | 72.11 |
M12W-1 | 64907194 | 60904330 | 9130228864 | 93.77 | 91.73 | 50.50 | 43150444 | 70.85 |
M12W-2 | 67880554 | 64278528 | 9636498748 | 94.64 | 92.71 | 50.50 | 46253368 | 71.96 |
M12W-3 | 63800848 | 60591442 | 9083866415 | 94.91 | 92.37 | 49.50 | 44956120 | 74.20 |
M16W-1 | 60207798 | 57616766 | 8638195009 | 95.64 | 93.86 | 49.50 | 43937315 | 76.26 |
M16W-2 | 63781302 | 60234872 | 9030243563 | 94.38 | 93.04 | 50.50 | 46392239 | 77.02 |
M16W-3 | 63639886 | 59723634 | 8953287453 | 93.79 | 91.74 | 50.00 | 45074618 | 75.47 |
1M4W, M12W, and M16W indicate muscle samples at 4, 12, and 16 weeks of age, respectively.
2Mapping ratio indicates the level of total mapped reads as a proportion of clean reads.