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. 2017 Mar 15;8:407. doi: 10.3389/fmicb.2017.00407

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Copyright © 2017 Seiffert, Carattoli, Schwendener, Collaud, Endimiani and Perreten.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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(A) Phylogenetic tree and (B) sequence alignment of the incRNAI-II of the IncB/O/K-group plasmids including references. The sequences were extracted from the IncK2 plasmids as well as from the reference plasmids of IncB and IncK. The IncB/O incRNAI-II reference sequence was derived from the paper of Couturier et al. (1988). Due to the absence of the complete nucleotide sequence of the IncB/O plasmid, pMU720 was not included into Figure 3. The phylogenetic tree was constructed by UPGMA method and Jukes-Cantor correction [Multiple alignment (open gap penalty (OG): 100%, unit gap penalty (UG): 0%, gap penalty: 100%), 2000 Bootstraps] using Bionumerics 7.6 (Applied Maths, Kortrijk, Belgium). H, human urine sample; P, poultry; PM, poultry meat.