Table 1.
P. fluorescens complex specific markers and their distribution within the phylogroups.
| Name | Gene name (accs. no.)b | P. fluorescens complex groupa | |||||||
|---|---|---|---|---|---|---|---|---|---|
| P. corrugata | P. koreensis | P. jessenii | P. mandelii | P. gessardii | P. fluorescens | P. protegens | P. chlororaphis | ||
| DGPf_0 | Hypothetical protein (PSF113_RS556935) | + | + | ± | + | − | − | ± | − |
| DGPf_1 | Type I secretion target (PSF113_RS30625) | + | − | − | − | − | − | − | − |
| DGPf_2 | FAD dependent oxidoreductase (PFL01_RS10805) | − | + | + | − | − | − | + | + |
| DGPf_3 | Glutamine synthetase (PputUW4_01890) | − | − | + | + | − | − | − | − |
| DGPf_4 | KWG repeat-containing protein (PFL_RS20920) | − | − | − | − | − | − | + | − |
| DGPf_5 | 3-phosphoshikimate 1-carboxyvinyltransferase (PFLA506_RS14455) | − | − | − | − | + | + | − | − |
| DGPf_6 | LysR family transcriptional regulator (PFL_RS18605) | − | − | − | − | + | − | ± | − |
| DGPf_7 | LysR family transcriptional regulator (PFLU_RS11255) | − | − | − | − | − | + | − | − |
| DGPf_8 | LuxR family transcriptional regulator (PCL1606_12410) | − | − | − | − | − | − | − | + |
The presence of the marker in all the strains of a group is indicated with a plus (+) while absence is indicated with a minus (−). Groups in which the marker can be present or absent depending on the strain is indicated with plus/minus (±).
a
Groups according to Garrido-Sanz et al. (2016).
b
Accession number of the most representative gene sequence within each group.