TABLE 5.

Proteins and transcripts more abundant in cells cultivated under DIC limitation

Locus tag, protein description	Ratios in proteomea	Ratios in transcriptomeb
Tcr_0682, hypothetical protein (prophage)	6, 24	0.9, 1.1, 1.2
Tcr_0838, carboxysomal form I RubisCO CbbL	30, 128	4.5, 5.2
Tcr_0839, carboxysomal form I RubisCO CbbS	84, 128	9.2, 10.7
Tcr_0840, carboxysome shell protein CsoS2	21, 74	2.9, 12.9, 14.3
Tcr_0841, carboxysome shell protein CsoSCA	17, 23	1.5, 3.2, 3.7
Tcr_0842, carboxysome shell protein CsoS4A	45, 74	3.2, 4.2, 5.1
Tcr_0843, carboxysome peptide B	ND	1.7, 2.4, 2.7
Tcr_0844, carboxysome shell protein CsoS1	2, 2	6.1, 12.8
Tcr_0845, carboxysome shell protein CsoS1	ND	2.7, 19.6
Tcr_0846, carboxysome shell protein CsoS1C	S1, 45; M2, 23	12.6, 14.6
Tcr_0847, bacterioferritin family protein	12, 42	4.5, 11.1
Tcr_0848, α-carboxysome RubisCO assembly factor	13, 28c	3.6, 5.5
Tcr_0850, Ham1-like protein	20, 91	1.2, 1.4, 1.7
Tcr_0852, LysR family transcriptional regulator	S, 7, 7; M, 5, 6	0.9, 1.2, 1.4
Tcr_0853, NADH subunit 5/MnhA homolog	ND	1.1, 1.3, 1.6
Tcr_0854, conserved hypothetical protein, DUF2309	42, 45	1.2, 1.4
Tcr_1019, hypothetical protein	S2, 6	3.0, 3.0
Tcr_1315, porin	14, 21	1.3, 2.4, 3.3
Tcr_2157, sulfur relay, DsrE/F-like protein	S, 4, 6; M, 5, 8	0.8, 0.8
Tcr_2158, sulfur relay, DsrE/F-like protein	S, 10, 13; M, 9, 16	0.8, 0.9
Tcr_2159, porin	S, 4, 6; M, 5, 8	0.8, 0.9, 0.9

^aRatios of abundances of quantified peptides for cells cultivated under low-DIC conditions/high-DIC conditions. When relevant, the cell fractions are indicated (S, soluble; M, membrane; S1, M1, and M2 indicate biological replicates of these fractions). ND, not determined.

^bRatios of transcripts for cells cultivated under low-DIC conditions/high-DIC conditions, from reference 20.

^cNot included in Table 1 because q values exceeded 0.05.