Table 1.
Datasets used in the experiments
| E.coli (simulated) | E.coli | Yeast | |
|---|---|---|---|
| Reference organism | |||
| Name | Escherichia coli | Escherichia coli | Saccharomyces cerevisiae |
| Strain | K-12 substr. MG1655 | K-12 substr. MG1655 | W303 |
| Reference sequence | NC_000913 | NC_000913 | CM001806-CM001823 |
| Genome size | 4.6 Mbp | 4.6 Mbp | 12 Mbp |
|
| |||
| PacBio data | |||
| Number of reads | 92 818 | 89 481 | 261 964 |
| Avg. read length | 9997 | 10 779 | 5891 |
| Coverage | 200× | 208× | 129× |
|
| |||
| Illumina data | |||
| Accession number | – | ERR022075 | SRR567755 |
| Number of reads | – | 2 316 613 | 4 503 422 |
| Read length | – | 100 | 100 |
| Coverage | – | 50× | 38× |