Table 6.
Comparison of both hybrid and self-correction tools on PacBio data
| Tool | Size | Aligned | Error rate | Genome coverage | Elapsed time | Memory peak | Disk peak | |
|---|---|---|---|---|---|---|---|---|
| (%) | (%) | (%) | (%) | (h) | (GB) | (GB) | ||
| E. coli | Original | 100.000 | 71.108 | 16.9126 | 100.000 | – | – | – |
| LoRDEC | 65.672 | 98.944 | 0.1143 | 99.820 | 0.96 | 0.368 | 1.570 | |
| proovread | 61.590 | 98.603 | 0.2789 | 99.728 | 28.65 | 9.522 | 7.174 | |
| PBcR (with Illumina) | 52.103 | 98.507 | 0.0682 | 98.769 | 15.13 | 17.429 | 160.154 | |
| Jabba | 2.873 | 99.945 | 0.0003 | 99.745 | 0.02 | 0.168 | 0.606 | |
| PBcR (only PacBio) | 51.068 | 86.023 | 0.6905 | 100.000 | 1.68 | 22.00 | 16.070 | |
| LoRDEC*+LoRMA | 66.223 | 99.318 | 0.2572 | 100.000 | 10.40 | 16.984 | 2.824 | |
| Yeast | Original | 100.000 | 89.929 | 16.8442 | 99.974 | – | – | – |
| LoRDEC | 75.522 | 97.337 | 0.9987 | 99.833 | 3.17 | 0.451 | 2.776 | |
| proovread | 0.306 | 97.156 | 0.8004 | 20.346 | 11.18 | 4.764 | 7.162 | |
| PBcR (with Illumina) | 57.337 | 98.100 | 0.3342 | 99.652 | 22.05 | 20.085 | 157.726 | |
| Jabba | 24.979 | 99.484 | 0.1279 | 99.900 | 0.17 | 1.031 | 0.993 | |
| PBcR (only PacBio) | 60.065 | 95.822 | 2.1018 | 99.907 | 4.42 | 9.571 | 24.610 | |
| LoRDEC*+LoRMA | 71.987 | 98.088 | 0.3644 | 99.375 | 21.08 | 17.968 | 4.852 |
Results for tools utilizing also Illumina data are shown on a grey background