Table 2.
Probe ID | Genomic position (hg19) | Illumina gene annotation | Genic region | GREAT annotation (38) | Brain region | DNA methylation difference (%) | P | DNA methylation difference (%) LNDBB | P-value LNDBB | DNA methylation difference (%) DBCBB | P-value DBCBB |
---|---|---|---|---|---|---|---|---|---|---|---|
cg08743050 | chr11:113113936 | NCAM1 | Body | TTC12; NCAM1 | Prefrontal cortex | −3.80 | 1.84E-08 | −1.80 | 0.15 | −4.63 | 8.39E-09 |
cg14609448 | chr21:34896882 | GART | Body; 3'UTR | DNAJC28; GART | Cerebellum | 2.29 | 2.48E-08 | 1.37 | 0.02 | 3.11 | 3.60E-08 |
cg08103144 | chr5:150028986 | SYNPO | Body | MYOZ3; SYNPO | Striatum | −3.17 | 3.64E-08 | 0.08 | 0.94 | −4.43 | 6.61E-11 |
cg03847432 | chr7:43391524 | HECW1 | Body | STK17A; HECW1 | Striatum | 2.71 | 5.23E-08 | 1.55 | 0.04 | 3.69 | 4.76E-08 |
cg22182016 | chr15:57998894 | GRINL1A; GCOM1 | TSS200; Body | POLR2M | Striatum | −0.51 | 5.67E-08 | −0.27 | 0.14 | −0.59 | 5.41E-08 |
cg01757160 | chr12:96588951 | ELK3 | 5'UTR | ELK3 | Cerebellum | 0.57 | 5.74E-08 | 0.58 | 5.13E-04 | 0.56 | 3.04e-05 |
cg25361651 | chr20:29847402 | DEFB115 | Body | DEFB115; DEFB116 | Striatum | 4.43 | 6.52E-08 | 2.27 | 0.10 | 5.63 | 3.67E-08 |
cg22221320 | chr1:89664340 | GBP4 | Body | GBP4 | Striatum | 6.93 | 7.88E-08 | 2.39 | 0.23 | 10.24 | 1.58E-09 |
cg07751266 | chr16:67515323 | ATP6V0D1 | TSS1500 | ATP6V0D1 | Hippocampus | −1.35 | 1.27E-07 | −1.35 | 1.27E-07 | – | – |
cg09757430 | chr13:28397122 | - | – | PDX1; GSX1 | Cerebellum | −3.13 | 1.37E-07 | −2.38 | 0.02 | −3.54 | 1.65E-06 |
cg05686445 | chr7:127636396 | C7orf54; SND1 | TSS1500; Body | LRRC4; SND1 | Prefrontal cortex | −3.65 | 1.63E-07 | −2.04 | 0.07 | −4.67 | 1.57E-07 |
cg20751795 | chr19:58281019 | ZNF586 | TSS200 | ZNF586 | Cerebellum | 0.57 | 1.64E-07 | 0. 42 | 1.17E-06 | 0.13 | 0.03 |