Table 4.
Probe ID | Genomic position (hg19) | Illumina gene annotation | Gene region | GREAT annotation (38) | Brain region | DNA methylation change (%) | P | DNA methylation change (%) LNDBB | P-value LNDBB | DNA methylation change (%) DBCBB | P-value DBCBB |
---|---|---|---|---|---|---|---|---|---|---|---|
cg18847009 | chr2:70175826 | – | – | ASPRV1; MXD1 | Prefrontal cortex | −0.51 | 8.98E-08 | −0.50 | 7.14E-07 | −0.66 | 0.03 |
cg26893445 | chr15:85924187 | AKAP13 | 5'UTR | AKAP13 | Striatum | 0.15 | 6.73E-08 | 0.16 | 6.80E-08 | 0.03 | 0.21 |
cg12595281 | chr15:93633172 | RGMA | TSS1500 | RGMA | Striatum | 0.68 | 6.85E-08 | 0.82 | 5.36E-10 | 0.13 | 0.07 |
cg20640266 | chr9:116811789 | ZNF618 | Body | AMBP; ZNF618 | Cerebellum | 0.60 | 1.62E-09 | 0.74 | 2.06E-06 | 0.32 | 0.02 |
cg27150552 | chr7:48026856 | SUNC1 | 3'UTR | HUS1; SUN3 | Cerebellum | 0.34 | 1.30E-08 | 0.36 | 6.44E-09 | 0.09 | 0.68 |
cg05209768 | chr2:164573665 | FIGN | Body | KCNH7; FIGN | Cerebellum | 0.70 | 1.55E-08 | 0.70 | 1.31E-07 | 0.70 | 0.04 |
cg07793808 | chr12:122019006 | KDM2B | TSS200; TSS1500 | KDM2B | Cerebellum | −0.19 | 1.66E-08 | −0.21 | 2.94E-04 | −0.17 | 1.28E-05 |
cg10218777 | chr3:133180261 | BFSP2 | Body | CDV3; BFSP2 | Cerebellum | 0.67 | 3.86E-08 | 0.65 | 4.24E-07 | 0.86 | 0.03 |
cg01682070 | chr16:29996774 | TAOK2 | Body | HIRIP3; TAOK2 | Cerebellum | 0.32 | 4.20E-08 | 0.37 | 1.21E-08 | 0.11 | 0.38 |
cg11786558 | chr17:2266589 | SGSM2 | Body | SGSM2; MNT | Cerebellum | 0.69 | 4.35E-08 | 0.84 | 1.23E-06 | 0.52 | 4.73E-03 |
cg26053083 | chr11:14995770 | – | – | CALCA | Cerebellum | −0.15 | 4.41E-08 | −0.15 | 2.53E-06 | −0.14 | 4.95E-03 |
cg01022840 | chr14:71250264 | MAP3K9 | Body | MAP3K9; TTC9 | Cerebellum | 0.63 | 7.86E-08 | 0.66 | 7.10E-07 | 0.53 | 0.04 |
cg08478539 | chr15:68640339 | ITGA11 | Body | FEM1B; ITGA11 | Cerebellum | 0.69 | 1.06E-07 | 0.80 | 3.06E-07 | 0.45 | 0.06 |
cg23788334 | chr2:137181176 | – | – | THSD7B; CXCR4 | Cerebellum | −0.13 | 1.15E-07 | −0.15 | 1.45E-05 | −0.11 | 1.56E-03 |
cg16904520 | chr2:230590962 | – | – | DNER; TRIP12 | Cerebellum | 0.26 | 1.25E-07 | 0.27 | 2.06E-06 | 0.22 | 0.02 |