Table 3. Genome-guided and de novo transcriptome assembly results for Chrysemys picta (CPI) and Apalone spinifera (ASP).
CEGs = Core Eukaryotic Genes.
| Genome-guided | De novo (genome-independent) | ||||||
|---|---|---|---|---|---|---|---|
| Species | Total reads (million) |
Million reads mapped (%) | Annotated transcripts (total) |
Longest transcriptt (bp) | Percent mapped reads | CEGs mapped out of 456 and (%) | Mammalian sex-differentiation genes mapped out of 27 and (%) |
| CPI | 305.9 | 297.5 (97%) | 72,615 (279,903) | 18,723 | 92% | 377 (83%) | 27 (100%) |
| ASP | 373.4 | 163.6(44%) | 76,761 (279,753) | 28,965 | 93% | 352 (77%) | 26 (96%) |