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. Author manuscript; available in PMC: 2018 Mar 1.
Published in final edited form as: Cytoskeleton (Hoboken). 2017 Jan 24;74(3):125–142. doi: 10.1002/cm.21352

Table 1.

Nucleotide sequences of the primer-pairs used for conventional RT-PCR

Primer Name Gene Isoform Primer/Probe Sequence Reference
Gen TPM1-1α&κ(+)
Gen TPM1-1α&κ(−)
TPM1-1α. Pro.(+)
TPM1-1κ Primer (+)
TPM1-1κ Pro (+)
TPM1-1
TPM1-1
TPM1-1
TPM1-1
TPM1-1
TPM1-1α & κ
TPM1-1α & κ
TPM1-1α
TPM1-1κ
TPM1-1κ
Primer
Primer
Probe
Prime
Probe
5′-CATGGATGCCATTAAGAAGAA-3′
5′-AAGTCATGTCATTGAGAGCG-3′
5′-CTTGAAGATGATCTGCTCGCAC-3′
5′-TAGAAGACGAACTAATTCAG-3′
5′-GGAAAAGAGGTTGCGCGTG-3′
TPM1-2α (+)
TPM1-2α (−)
TPM1-2ν(−)
TPM1-2
TPM1-2
TPM1-2
TPM1-2α
TPM1-2α
TPM1-2ν
Primer
Primer
Primer
5′-ACTCACACAGCCATGGAT-3′
5′-GCCCGGAGCCGAGATGAGATGT-3′
5′-TGGTCTTCTCAAGCTTGGCCTCCT-3′
M24635.1
M24635.1
This study
TPM2α(+)
TPM2α(−)
TPM2
TPM2
TPM2α
TPM2α
Primer
Primer
5′-ATGGAGGCCATCAAGAAGAA-3′
5′-AGACAGAGGAGACCGAAAGAGT-3′
TPM3α (+)
TPM3α(−)
TPM3
TPM3
TPM3α
TPM3α
Primer
Primer
5′-GTAACACATTAAAATGGCCGGAT-3′
5′-TTAGAAACTATTGAGCTCGCTCA-3′
TPM4-2(+)
TPM4-2(−)
TPM4-3(+)
TPM4-2
TPM4-2
TPM4-2
TPM4-2α
TPM4-2α
Primer
Primer for Nested PCR
5′-TCCCTCACAGCAGCACAA-3′
5′-CACAGATTCTGATTCAGTTATA-3′
5′-ATGGAGGCCATCAAGAAGAA
Name Gene Isoform Primer/Probe Sequence Reference
TPM4-1α (+)
TPM4-1α (−)
TPM4-1.Total(+)
TPM4-1.Total(−)
TPM4-1.Probe
TPM4-1
TPM4-1
TPM4-1
TPM4-1
TPM4-1
TPM4-1α
TPM4-1α
Total transcripts
Total transcripts
Primer +ve
Primer −ve
Primer +ve
Primer −ve
Probe
5′-CCATGGAGGCCATCAAGAA-3′
5-CAGGGATGTCGTGTCATTGAGAGCATGA-3′
5′-GCCCTGAACCGCAGGATT-3′
5′-ATTTTTCCAGTTTGGCCACTGT-3′
5′-AGAAGACAAGTATGAAGAAG-3′
NM001024467
NM_001024467
NM_001024467
NM_001024467
NM_001024467