TABLE 3.
Dideoxyoligonucleotide primers used for P. aeruginosa MLST
Locus and function | Primer sequence (5′ to 3′)
|
Amplicon size (bp) | |
---|---|---|---|
Forward | Reverse | ||
acsA | |||
Amplification | ACCTGGTGTACGCCTCGCTGAC | GACATAGATGCCCTGCCCCTTGAT | 842 |
Sequencing | GCCACACCTACATCGTCTAT | GTGGACAACCTCGGCAACCT | 390 |
aroE | |||
Amplification | TGGGGCTATGACTGGAAACC | TAACCCGGTTTTGTGATTCCTACA | 825 |
Sequencing | ATGTCACCGTGCCGTTCAAG | TGAAGGCAGTCGGTTCCTTG | 495 |
guaA | |||
Amplification | CGGCCTCGACGTGTGGATGA | GAACGCCTGGCTGGTCTTGTGGTA | 940 |
Sequencing | AGGTCGGTTCCTCCAAGGTC | TCAAGTCGCACCACAACGTC | 372 |
mutL | |||
Amplification | CCAGATCGCCGCCGGTGAGGTG | CAGGGTGCCATAGAGGAAGTC | 940 |
Sequencing | AGAAGACCGAGTTCGACCAT | ATGACTTCCTCTATGGCACC | 441 |
nuoD | |||
Amplification | ACCGCCACCCGTACTG | TCTCGCCCATCTTGACCA | 1,042 |
Sequencing | ACGGCGAGAACGAGGACTAC | TTCACCTTCACCGACCGCCA | 366 |
ppsA | |||
Amplification | GGTCGCTCGGTCAAGGTAGTGG | GGGTTCTCTTCTTCCGGCTCGTAG | 989 |
Sequencing | GGTGACGACGGCAAGCTGTA | TCCTGTGCCGAAGGCGATAC | 369 |
trpE | |||
Amplification | GCGGCCCAGGGTCGTGAG | CCCGGCGCTTGTTGATGGTT | 811 |
Sequencing | TTCAACTTCGGCGACTTCCA | GGTGTCCATGTTGCCGTTCC | 441 |