Table 3. Test set of effectors and effector candidates that have been experimentally shown to localize to the plant chloroplast and the predictions by several classifiers.
| Effector | CTP1 | CTP2 | CTP3 | MLP124111 | PST03196 | PST18220 | ToxA |
|---|---|---|---|---|---|---|---|
| Reference | Petre et al. (2015b), Petre et al. (2015a) | Petre et al. (2016) | Manning and Ciuffetti (2005) | ||||
| Species | Melampsora larici-populina | M. lini | M. larici-populina | Puccinia striiformis f. sp. tritici | Pyrenophora tritici-repentis | ||
| Comment | Also in mitochondria | — | — | Also in cytosolic aggregates | Also in nucleus | Also in cytoplasm | |
| Subcellular localization prediction | |||||||
| LOCALIZER | Chloroplast | Chloroplast | Chloroplast | — | Chloroplast, Mitochondria, Nucleus | — | Chloroplast |
| ChloroP | Chloroplast | — | — | — | — | — | — |
| TargetP | Mitochondria | Mitochondria | — | Mitochondria | — | — | — |
| WoLF PSORT | Chloroplast | Chloroplast | Chloroplast | Mitochondria | Cytosol | Nucleus | Cytoskeleton |
| YLOC | Secreted | Secreted | Secreted | Secreted | Chloroplast | Nucleus | Cytoplasm |
| Predotar | — | — | — | — | — | — | — |
| BaCelLo | Secreted | Secreted | Secreted | Secreted | Nucleus | Nucleus | Nucleus |
All methods except LOCALIZER were supplied with the mature effector sequences.