Table 1.
Peptide binding to HLA-A*02:01 or HLA-A*24:02 was predicted by four different algorithms as indicated. Peptide binding to HLA-DR.B1 was predicted by SYFPETHI algorithm. All software can be found in the Materials and methods.
| HLA-class-II-binding scores by SYFPETHI prediction algorithm. | ||||||||
|---|---|---|---|---|---|---|---|---|
| BIMAS |
SYFPETHI |
RANK-PEP |
Net MHC (kd, nM) |
|||||
| Sequences (p239–247) | HLA-A*02:01 | HLA-A*24:02 | HLA-A*02:01 | HLA-A*24:02 | HLA-A*02:01 | HLA-A*24:02 | HLA-A*02:01 | HLA-A*24:02 |
| NQMNLGATL | 8.014 | 7.200 | 16 | 10 | 34 | 10.482 | 917 | 4343 |
| NLMNLGATL | 79.041 | 7.2 | 26 | 10 | 78 | 8.948 | 59 | 6771 |
| NYMNLGATL | 0.011 | 360.000 | 16 | 20 | 41 | 23.573 | 13011 | 56 |