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. Author manuscript; available in PMC: 2017 Mar 19.
Published in final edited form as: Int J Syst Evol Microbiol. 2017 Mar 16;67(2):379–385. doi: 10.1099/ijsem.0.001637

Table 4. Comparison of the presence and absence of selected genes.

           Genes putatively encoding P. wuianus sp. nov. P. asymbioticus P. duraquae P sinensis P. yangtzensis
QLW-P1FAT50C-4T QLW-P1DMWA-1T MWH-MoK4T MWH-HuW1T MWH-JaK3T
Inorganic nutrients
           ABC-type Fe3+ transport system ➖ ➖ ➕ ➕ ➕
           feoAB genes (uptake of Fe2+) ➕ ➕ ➖ ➕ ➕
           ABC-type Nitrate/Nitrite/Cyanate transporter ➕ ➕ ➖ ➖ ➕
           Nitrate reductase (assimilatory) ➕ ➕ ➖ ➖ ➕
           Nitrite reductase (assimilatory) ➕ ➕ ➖ ➖ ➕
           Cyanate lyase (releases NH3 and CO2 from cyanate) ➕ ➕ ➖ ➖ ➕
           Urease and ABC-type urease transporter ➕ ➕ ➖ ➖ ➖
Oxidative phosphorylation/Energy metabolism
           Cytochrome bd-I terminal oxidase (CydAB) ➕ ➕ ➖ ➕ ➖
           Fumarate reductase ➕ ➖ ➕ ➖ ➕
           Carbon monoxide dehydrogenase ➕ ➖ 2 clusters ➖ ➕
           Acetate permease actP ➖ ➕ ➖ ➖ ➖
Anoxygenic photosynthesis
           Photosynthesis gene cluster ➕ ➖ ➕ ➖ ➖
Motility
           Flagella genes ➖ ➖ ➕ ➖ ➖
Oxidative stress
           Catalase ➖ 2 genes ➖ ➖ 1 gene
Other
           Cellulose synthase operon protein C ➖ ➕ ➖ ➖ ➖
           Cellulose synthase catalytic subunit [UDP-forming] ➖ ➕ ➖ ➖ ➖