Table 1. The significantly different copy numbers of thirty nine genes in metastasis and non-metastasis groups.
Gene name | Position | Average CN | P value | Non-metastasis | Metastasis | ||||
---|---|---|---|---|---|---|---|---|---|
Average CN | Amplification | Deletion | Average CN | Amplification | Deletion | ||||
TPM3 | Chr1:154117779-154165725 | 2.32 | 0.021 | 2.16 | 8 (0.42) | 0 (0) | 2.49 | 13 (0.68) | 0 (0) |
MUC1 | Chr1:155148299-155172706 | 2.28 | 0.023 | 2.14 | 8 (0.42) | 1 (0.05) | 2.42 | 13 (0.68) | 0 (0) |
RAB25 | Chr1:156020966-156050295 | 2.31 | 0.029 | 2.16 | 8 (0.42) | 1 (0.05) | 2.46 | 13 (0.68) | 0 (0) |
SDHC | Chr1:161274165-161344535 | 2.35 | 0.021 | 2.17 | 8 (0.42) | 0 (0) | 2.53 | 14 (0.74) | 0 (0) |
FCGR2B | Chr1:161622904-161658444 | 2.34 | 0.022 | 2.17 | 8 (0.42) | 0 (0) | 2.51 | 14 (0.74) | 0 (0) |
PBX1 | Chr1:164518596-164831060 | 2.32 | 0.049 | 2.17 | 8 (0.42) | 0 (0) | 2.46 | 13 (0.68) | 0 (0) |
PRRX1 | Chr1:170623312-170718541 | 2.30 | 0.023 | 2.14 | 7 (0.37) | 0 (0) | 2.46 | 13 (0.68) | 0 (0) |
TNN | Chr1:175026993-175127202 | 2.30 | 0.023 | 2.14 | 7 (0.37) | 0 (0) | 2.46 | 13 (0.68) | 0 (0) |
RFWD2 | Chr1:175903966-176186370 | 2.28 | 0.025 | 2.12 | 7 (0.37) | 1 (0.05) | 2.45 | 13 (0.68) | 0 (0) |
ABL2 | Chr1:179058461-179122224 | 2.30 | 0.023 | 2.14 | 7 (0.37) | 0 (0) | 2.46 | 13 (0.68) | 0 (0) |
RNASEL | Chr1:182532768-182568394 | 2.29 | 0.023 | 2.14 | 7 (0.37) | 0 (0) | 2.44 | 13 (0.68) | 0 (0) |
LAMC2 | Chr1:183145173-183220406 | 2.29 | 0.023 | 2.14 | 7 (0.37) | 0 (0) | 2.44 | 13 (0.68) | 0 (0) |
TPR | Chr1:186270785-186354457 | 2.28 | 0.045 | 2.14 | 7 (0.37) | 0 (0) | 2.42 | 12 (0.63) | 0 (0) |
PTGS2 | Chr1:186630943-186659559 | 2.30 | 0.034 | 2.14 | 7 (0.37) | 0 (0) | 2.46 | 12 (0.63) | 0 (0) |
TGFB2 | Chr1:218508675-218627961 | 2.28 | 0.045 | 2.14 | 7 (0.37) | 0 (0) | 2.42 | 12 (0.63) | 0 (0) |
CDC42BPA | Chr1:227167565-227515826 | 2.30 | 0.043 | 2.16 | 6 (0.32) | 0 (0) | 2.44 | 12 (0.63) | 0 (0) |
OBSCN | Chr1:228385860-228558951 | 2.30 | 0.043 | 2.16 | 6 (0.32) | 0 (0) | 2.44 | 12 (0.63) | 0 (0) |
RHOU | Chr1:228770393-228892416 | 2.30 | 0.043 | 2.16 | 6 (0.32) | 0 (0) | 2.44 | 12 (0.63) | 0 (0) |
AKT3 | Chr1:243641534-244016584 | 2.26 | 0.047 | 2.14 | 6 (0.32) | 0 (0) | 2.39 | 12 (0.63) | 0 (0) |
NCOA1 | Chr2:24797345-25003570 | 2.23 | 0.036 | 2.10 | 5 (0.26) | 1 (0.05) | 2.35 | 11 (0.58) | 0 (0) |
DNMT3A | Chr2:25445829-25485184 | 2.23 | 0.036 | 2.10 | 5 (0.26) | 1 (0.05) | 2.35 | 11 (0.58) | 0 (0) |
ALK | Chr2:29405639-30154477 | 2.25 | 0.024 | 2.12 | 5 (0.26) | 0 (0) | 2.37 | 12 (0.63) | 0 (0) |
MRAS | Chr3:138056489-138134377 | 2.61 | 0.029 | 2.37 | 13 (0.68) | 0 (0) | 2.86 | 16 (0.84) | 0 (0) |
PIK3CB | Chr3:138361539-138436463 | 2.62 | 0.029 | 2.37 | 13 (0.68) | 0 (0) | 2.88 | 16 (0.84) | 0 (0) |
FOXL2 | Chr3:138653065-138675982 | 2.62 | 0.043 | 2.39 | 13 (0.68) | 0 (0) | 2.86 | 16 (0.84) | 0 (0) |
GMPS | Chr3:155578324-155665520 | 2.74 | 0.042 | 2.51 | 15 (0.79) | 0 (0) | 2.96 | 18 (0.95) | 0 (0) |
CCNL1 | Chr3:156855585-156888482 | 2.75 | 0.032 | 2.51 | 15 (0.79) | 0 (0) | 2.98 | 18 (0.95) | 0 (0) |
LMO2 | Chr11:33870122-33901371 | 2.15 | 0.031 | 2.05 | 2 (0.11) | 4 (0.21) | 2.25 | 9 (0.47) | 2 (0.11) |
FGF4 | Chr11:69577796-69600171 | 5.14 | 0.045 | 3.15 | 11 (0.58) | 0 (0) | 7.12 | 13 (0.68) | 0 (0) |
ZBTB16 | Chr11:113920430-114131397 | 1.90 | 0.049 | 1.97 | 2 (0.11) | 4 (0.21) | 1.83 | 1 (0.05) | 10 (0.53) |
PAFAH1B2 | Chr11:117004999-117051761 | 1.90 | 0.049 | 1.97 | 2 (0.11) | 4 (0.21) | 1.83 | 1 (0.05) | 10 (0.53) |
PCSK7 | Chr11:117065787-117112811 | 1.90 | 0.049 | 1.97 | 2 (0.11) | 4 (0.21) | 1.83 | 1 (0.05) | 10 (0.53) |
H2AFX | Chr11:118954584-118976177 | 1.89 | 0.041 | 1.95 | 2 (0.11) | 4 (0.21) | 1.83 | 1 (0.05) | 11 (0.58) |
CHEK1 | Chr11:125485030-125537042 | 1.91 | 0.017 | 2.00 | 3 (0.16) | 3 (0.16) | 1.83 | 1 (0.05) | 10 (0.53) |
CCNB1IP1 | Chr14:20769528-20807533 | 2.36 | 0.039 | 2.14 | 6 (0.32) | 2 (0.11) | 2.58 | 12 (0.63) | 1 (0.05) |
TRA@ | Chr14:22080057-23031075 | 2.29 | 0.040 | 2.13 | 6 (0.32) | 3 (0.16) | 2.45 | 12 (0.63) | 1 (0.05) |
CTDP1 | Chr18:77429800-77524510 | 1.91 | 0.041 | 1.98 | 2 (0.11) | 3 (0.16) | 1.84 | 2 (0.11) | 11 (0.58) |
OLIG2 | Chr21:34388215-34411503 | 1.94 | 0.036 | 2.04 | 4 (0.21) | 3 (0.16) | 1.84 | 0 (0) | 7 (0.37) |
ITSN1 | Chr21:35004783-35220802 | 1.94 | 0.030 | 2.03 | 4 (0.21) | 3 (0.16) | 1.85 | 0 (0) | 7 (0.37) |