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. 2017 Jan 6;8(8):13413–13427. doi: 10.18632/oncotarget.14542

Table 1. Representative lists of N-glycosite-containing peptides whose changes before and after normalization by protein abundance.

Pattern Protein Gene names Deamidation (N) Probabilities Position Glycopeptide ratio Protein ratio Calibrated ratio
1 P03956 MMP1 AFQIWSN(1)VTPITFTK 143 6.07 ± 2.32 2.14 ± 0.92 2.84
2 O75326-2 SEMA7A HPSCWNIVN(1)GTVVPIGEMR 143 2.41 ± 0.88 2.15 ± 0.67 1.12
NPEAPIN(1)VSR 244 3.48 ± 2.10 2.15 ± 0.67 1.62
B5MCA4 EPCAM QCN(1)GTSMCWCVNTAGVR 139 2.21 ± 0.26 2.19 ± 0.09 1.01
Q9H9S5 FKRP DIFN(1)ISAPIAR 209 3.43 ± 0.76 2.48 ± 1.68 1.38
A0A087X0S5 COL6A1 N(1)VTAQICIDK 802 2.44 ± 0.06 2.62 ± 0.94 0.93
RN(1)FTAADWGQSR 212 2.47 ± 0.90 2.62 ± 0.94 0.95
Q9H6B4 CLMP HVYN(1)N(1)ITEEQK 74 2.34 ± 0.29 2.70 ± 0.57 0.86
F6SFZ6 P2RX4 CVAFN(1)GSVK 153 2.06 ± 0.44 2.73 ± 0.19 0.75
Q06481-5 APLP2 RN(1)QSISIIYK 312 2.35 ± 0.17 2.91 ± 0.39 0.81
P17813-2 ENG QN(1)GTWPR 88 7.47 ± 1.13 5.92 ± 2.58 1.26
H0Y5C0 ADGRL2 GPDISN(1)CTSHWVNQIAQK 388 7.13 ± 1.55 6.62 ± 2.45 1.08
O95025 SEMA3D VIQPYN(1)K 139 94.03 ± 66.77 48.82 ± 60.86 1.93
P08183 ABCB1 SDIN(1)DTGFFMNIEEDMTR 99 92.41 ± 59.54 56.46 ± 29.53 1.64
3 P32004-3 L1CAM FFPYAN(1)GTIGIR 474 2.00 ± 0.71 0.68 ± 0.09 2.93
Q15904 ATP6AP1 QPVSPVIHPPVSYN(1)DTAPR 261 3.03 ± 2.84 1.14 ± 0.06 2.67
O43852-5 CALU N(1)ATYGYVIDDPDPDDGFNYK 131 2.57 ± 0.87 1.16 ± 0.14 2.22
G3XAI2 LAMB1 MEMPSTPQQIQN(1)ITEDIR 1566 2.64 ± 1.70 1.21 ± 0.17 2.19
GTN(1)YTVR 701 3.24 ± 0.13 1.21 ± 0.17 2.68
Q76M96 CCDC80 IIGVGEEVGGVIEIFPIN(1)GSSVVEREDVPAHIVK 835 3.21 ± 1.29 1.42 ± 0.25 2.26
P15144 ANPEP GPSTPIPEDPNWN(1)VTEFHTTPK 265 3.68 ± 2.96 1.84 ± 0.18 2.00
4 C9J5X1 IGF1R N(1)GSQSMYCIPCEGPCPK 314 2.11 ± 1.03 1.11 ± 0.39 1.91
Q6UY14 ADAMTSL4 IGTEFN(1)VTSPSN(1)CSHIPRPPAIQPCQGQACQDR 946 2.14 ± 1.66 1.14 ± 0.36 1.88
IGTEFN(1)VTSPSN(1)CSHIPRPPAIQPCQGQACQDR 952 2.14 ± 1.66 1.14 ± 0.36 1.88
G3XAI2 LAMB1 ISDTTSQSN(1)STAK 1303 2.21 ± 0.32 1.21 ± 0.17 1.83
C9JP16 CRTAP N(1)CSAAPQPEPAAGIASYPEIR 87 2.24 ± 1.65 1.25 ± 0.12 1.80
Q15293 RCN1 VVRPDSEIGERPPEDN(1)QSFQYDHEAFIGK 53 2.30 ± 1.64 1.32 ± 0.06 1.74
Q96L58 B3GALT6 DAYEN(1)ITAK 131 2.63 ± 0.28 1.36 ± 0.91 1.93
Q02809 PLOD1 REQIN(1)ITIDHR 197 2.06 ± 0.56 1.38 ± 0.22 1.49
A0A0A0MSA9 PVR VEDEGN(1)YTCIFVTFPQGSR 120 2.11 ± 0.39 1.47 ± 0.20 1.43
P25391 LAMA1 HQVSIN(0.979)N(0.021)TAVMQR 555 2.91 ± 0.81 1.60 ± 0.52 1.83
DVAGISQEIIN(1)TSASISR 2038 3.17 ± 1.02 1.60 ± 0.52 1.99
Q9H488-2 POFUT1 EGNPFGPFWDQFHVSFN(1)K 160 3.08 ± 1.13 1.69 ± 0.30 1.82
Q92859-3 NEO1 TISDVPSAAPQN(1)ISIEVR 639 2.40 ± 0.94 1.73 ± 0.42 1.39
O15440-5 ABCC5 QGSGN(1)TTVTRGN(1)ETSVSDSMK 897 2.21 ± 0.41 1.76 ± 0.09 1.26
P78324-4 SIRPA IQITWIEN(1)GN(1)VSR 291 2.23 ± 0.31 1.80 ± 0.65 1.24
IGN(1)ITPADAGTYYCVK 110 2.27 ± 0.29 1.80 ± 0.65 1.26
GTAN(1)ISETIR 244 2.34 ± 0.40 1.80 ± 0.65 1.30
AENQVN(1)VTCQVR 269 2.35 ± 0.49 1.80 ± 0.65 1.30
Q17RY6 LY6K YCN(1)IEGPPIN(1)SSVFK 129 2.55 ± 0.85 1.80 ± 0.14 1.42
A0A087WZ85 ROBO1 NYIGEAVSHN(1)ASIEVAIIR 41 2.13 ± 0.43 1.83 ± 0.33 1.16
P43121 MCAM ENMVIN(1)ISCEASGHPR 449 2.37 ± 0.15 1.84 ± 0.33 1.29
CVASVPSIPGIN(1)R 418 2.52 ± 0.79 1.84 ± 0.33 1.37
5 P56159-2 GFRA1 ETN(1)FSIASGIEAK 59 3.07 ± 0.55 0.34 ± 0.11 8.95
C9JE12 TMUB1 FIN(1)DSEQVAR 111 2.82 ± 1.99 0.49 ± 0.25 5.73
6 H0Y5C0 ADGRL2 SIGQFISTEN(1)ATIK 599 1.83 ± 0.19 6.62 ± 2.45 0.28
9 P40189-3 IL6ST ETHIETN(1)FTIK 157 0.62 ± 0.24 1.30 ± 0.43 0.48
10 Q96L35 EPHB4 IN(1)GSSIHIEWSAPIESGGR 335 1.05 ± 0.92 0.46 ± 0.06 2.28
12 P26006 ITGA3 DDCERMN(1)ITVK 107 0.31 ± 0.01 0.63 ± 0.06 0.50
Q16610 ECM1 QGN(0.04)N(0.96)HTCTWK 354 0.26 ± 0.09 0.74 ± 0.17 0.35
13 Q92508 PIEZO1 HMIAIAPN(1)STAR 2331 0.48 ± 0.13 0.56 ± 0.10 0.85
O60568 PLOD3 EQYIHEN(1)YSR 548 0.49 ± 0.08 0.58 ± 0.06 0.84
H0YNA7 SPPL2A DMN(1)QTIGDN(1)ITVK 107 0.40 ± 0.10 0.61 ± 0.11 0.65
DMN(1)QTIGDN(1)ITVK 113 0.48 ± 0.06 0.61 ± 0.11 0.80
P08473 MME EIAN(1)ATAKPEDR 285 0.49 ± 0.06 0.63 ± 0.01 0.77
A0A0A0MT32 LIPA YDIPASINFIIN(1)K 45 0.47 ± 0.07 0.68 ± 0.03 0.69
P32004-3 L1CAM GYN(1)VTYWR 844 0.39 ± 0.03 0.68 ± 0.09 0.57
K7ELL7 PRKCSH YEQGTGCWQGPN(1)R 483 0.50 ± 0.05 0.78 ± 0.04 0.64
P56199 ITGA1 YN(1)HTGQVIIYR 460 0.46 ± 0.16 0.78 ± 0.21 0.59
SEN(1)ASIVISSSNQK 1113 0.47 ± 0.08 0.78 ± 0.21 0.60
14 P43007 SLC1A4 VVTQN(1)SSSGN(1)VTHEK 206 0.23 ± 0.06 0.24 ± 0.05 0.95
VVTQN(1)SSSGN(1)VTHEK 201 0.30 ± 0.05 0.24 ± 0.05 1.22
P32970 CD70 GDTICTN(1)ITGTIIPSR 170 0.36 ± 0.07 0.30 ± 0.08 1.21
FAQAQQQIPIESIGWDVAEIQIN(1)HTGPQQDPR 63 0.44 ± 0.08 0.30 ± 0.08 1.49
Q99523 SORT1 IAN(1)N(1)THQHVFDDIR 98 0.37 ± 0.06 0.34 ± 0.06 1.09
DITDIIN(1)N(1)TFIR 162 0.40 ± 0.08 0.34 ± 0.06 1.17
P56159-2 GFRA1 SN(0.999)VSGN(0.002)THICISN(0.736)GN(0.262)YEK 401 0.35 ± 0.06 0.34 ± 0.11 1.01
Q6UW63 KDELC1 N(1)STAVWR 302 0.43 ± 0.05 0.39 ± 0.06 1.10
Q68CQ7 GLT8D1 RQN(1)ITNQIEK 257 0.44 ± 0.04 0.40 ± 0.03 1.10
SNVIFYIVTIN(0.998)N(0.002)TADHIR 103 0.45 ± 0.07 0.40 ± 0.03 1.12
Q495W5-2 FUT11 IFN(1)ITSTFSR 166 0.44 ± 0.08 0.40 ± 0.04 1.08
P11279 LAMP1 IININ(0.007)PN(0.993)K 261 0.44 ± 0.04 0.42 ± 0.03 1.04
GHTITIN(1)FTR 103 0.44 ± 0.12 0.42 ± 0.03 1.05
SPSVDKYN(1)VSGTN(1)GTCIIASMGIQIN(1)ITYER 223 0.46 ± 0.10 0.42 ± 0.03 1.08
SPSVDKYN(1)VSGTN(1)GTCIIASMGIQIN(1)ITYER 228 0.46 ± 0.10 0.42 ± 0.03 1.08
SPSVDKYN(1)VSGTN(1)GTCIIASMGIQIN(1)ITYER 241 0.46 ± 0.10 0.42 ± 0.03 1.08
N(1)MTFDIPSDATVVINR 62 0.47 ± 0.05 0.42 ± 0.03 1.12
YSVQIMSFVYN(1)ISDTHIFPN(1)ASSK 121 0.48 ± 0.18 0.42 ± 0.03 1.15
YSVQIMSFVYN(1)ISDTHIFPN(1)ASSK 130 0.48 ± 0.18 0.42 ± 0.03 1.15
Q10589-2 BST2 GFQDVEAQAATCN(1)HTVMAIMASIDAEK 80 0.48 ± 0.07 0.44 ± 0.07 1.09
N(1)VTHIIQQEITEAQK 53 0.50 ± 0.09 0.44 ± 0.07 1.13
Q07954 LRP1 DN(1)TTCYEFKK 1575 0.35 ± 0.09 0.47 ± 0.07 0.76
TCVSN(1)CTASQFVCK 3333 0.41 ± 0.16 0.47 ± 0.07 0.88
GVTHIN(1)ISGIK 3953 0.43 ± 0.11 0.47 ± 0.07 0.92
MHIN(1)GSNVQVIHR 3089 0.43 ± 0.10 0.47 ± 0.07 0.93
CN(1)ASSQFICSSGR 2905 0.44 ± 0.04 0.47 ± 0.07 0.94
IETIIIN(1)GTDRK 729 0.44 ± 0.03 0.47 ± 0.07 0.95
WTGHN(1)VTVVQR 1511 0.44 ± 0.13 0.47 ± 0.07 0.95
IN(1)GTDPIVAADSK 4075 0.45 ± 0.05 0.47 ± 0.07 0.96
INIDGSN(1)YTIIK 3048 0.46 ± 0.05 0.47 ± 0.07 0.99
IYWTDGDN(1)ISMAN(0.002)MDGSN(0.998)R 1733 0.47 ± 0.09 0.47 ± 0.07 1.00
IYWTDGDN(1)ISMAN(0.002)MDGSN(0.998)R 1723 0.47 ± 0.09 0.47 ± 0.07 1.00
FGTCSQICN(0.996)N(0.004)TK 3839 0.48 ± 0.11 0.47 ± 0.07 1.03
ITSCATN(1)ASICGDEAR 3788 0.49 ± 0.10 0.47 ± 0.07 1.05
FN(1)STEYQVVTR 446 0.50 ± 0.09 0.47 ± 0.07 1.08
P18465 HLA-B YYN(1)QSEAGSHIIQVMYGCDVGPDGR 110 0.49 ± 0.05 0.47 ± 0.03 1.06